Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0546 ATGGCATCAGAGCGGCCGCTCTTGATTGTTTCTCCAAGAACACCCCAAACGATATCTCACGATCTACATAAACCGGAGCCGAACCGACTCGGATTGTTCTTCGCCATGGATTCTGGGACTCTGAATGAGAACCCGCCGAGTACCGAACTGGCTCACCGCTCTTTCTCGCGGCGAAGTCAATCGTCGCTACAATCGAAGAACTCAATTCGTGAAGTGGGTTCCAGTGAGTTTGGATCGAGGCCGGTTCGACATGGTTCTCGAGGAGCTGATTCGGAAGCGTTTAGCCTTTCCCAGAAGGAGATCAGTGATGAAGATGCAAGGTTGATTTACATTGATGATCCTGAAAAAACGAATGAGAGGTTCGAATTCTCTCGAAATTCGATTCGAACTGGCAAGTATTCGATTCTAACTTTTCTTCCCAGGAATCTGTTTGAACAGTTTCATAGAATTGCTTATATATATTTCCTTGTTATTGCTGTTCTTAATCAACTTCCCCAGCTTGCGGTTTTCGGCCGGGGAGTATCGATTATGCCTTTAGCTTTTGTGCTTTTAGTTACTGCTGTAAAGGATGCATATGAGGATTGGAGAAGGCATCGGTCTGATAAGATTGAGAACAATAGATTAGCTTCAGTTTTGGTAGATGGAAAGTTTCAAGATAAGAAATGGAAGGATGTTTGTGTTGGTGAGATAATTAAGATTGGTTCAAATGGCACCATTCCTTGTGATATGGTGCTTCTCTCTACCAGTGATTCCACTGGGGTTGCTTATGTGCAGACTCTGAATTTGGATGGAGAATCGAATTTGAAAACACGGTATGCGAAGCAAGAAACGATGTCGAAAATGCCCGACAAGGAGAAGATTTTTGGGGTGATTAAATGTGAGAAACCTAATAGGAATATCTATGGATTTTATGCCAATATGGAGATTGATGGGAAACGTCTTTCTCTTGGACCTCCAAACATTGTTCTTCGTGGCTGTGAGCTCAAGAATACGAGTTGGGCTGTTGGTGTTGCTGTCTATGCTGGCCGCGAAACCAAAGTCATGCTTAACAGTTCTGGAGCTCCATCGAAACGAAGTCGACTCGAGACTCGCATGAATGTGGAGATTATTATTCTCTCTTTCTTTCTCATTGCTTTGTGTACAGTTGTTTCTGTTTTGGCTGCTGTTTGGTTCTTCAGAAATAGGGAAGATTTGGACGTTTTGCCTTTTTTCAGAGATATGGATTTCTCAAAAGACCCACCTGAAACCTACAATTACTATGGATGGGGATTGGAGGCTTTTTTTGTATTCCTCATGTCAGTCATAGTGTTTCAGGTCATGATCCCCATTTCACTTTACATTTCGATGGAGCTTGTTCGTGTCGGTCAGGCTTATTTCATGATTCGAGACGCCCAAATGTACGATGAAACATCAAACTCAAGATTTCAGTGCCGGGCTTTGAACATAAATGAGGATTTAGGACAAATAAAGTATGTGTTTTCAGATAAAACAGGTACTCTTACTGAGAATAAGATGGAGTTTCGATGTGCAAGCATTTGGGGGGTCGATTATGGAGGTGAAAATGCCAGCCCCTTCGACGAGCAGAACGGATACTCTATTCGAGTTAATGGGAAGGTTTTGAGACCGAAATTGGCTGTCAAAACCGACCCCGAGCTTCTACAGTTATCGAAAAGCGGAAAGCACACTAGGGATGGAAGATATATTCATGATTTCTTCCTCGCATTAGCTGCTTGCAATACCATTGTTCCTCTCATTACCGAAACTTCTGATCCTTCAGTGCAATTACTTGACTACCAAGGGGAGTCTCCAGATGAGCAGGCATTGGTTTATGCTGCAGCAGCATATGGTTATATGCTAATCGAACGAACTTCTGGCCATATCGTTATTGACATACATGGTGAAAAACAAAGGTATAACGTTTTGGGAATGCACGAGTTTGACAGCGACAGGAAGCGAATGTCTGTGATATTGGGGTGTCCTGATACGACCTTCAAAGTATTCGTAAAAGGTGCTGATAATGCCATGTTCAAGGTGATGGGTGAAAACCTGAACGCGAGTATCATTCAAGCGACTAAAACTCATCTTCATTCATACTCGTCAAAGGGTCTCAGAACTTTGGTTATTGGAATGAAAGAACTCACCTCTTCCGACTTTGCTCAATGGCACGCGGTGTTTGAAGAAGCAAGCACCGCTTTGATAGGCAGGGCTGCTAAGCTTCGCAAGGTTGCGAGTAGCATAGAAAACAATTTGTCCATATTGGGTGCCTCAGGCATTGAAGATAAGTTACAAAAAGGTGTGCCAGAAGCCATAGAAGCTTTAAGAATGGCAGGAATTAAAGTATGGGTTTTGACTGGGGACAAGCAAGAAACTGCCATATCAATTGGTTACTCCTCAAAGCTATTGACAAACAAGATGACTCAGATTATAATTAACTGCAACTCTGTGGATTCATGCCAAAGGAGTTTAGAAGATGCAATAATCATGTCGAAGAGGCTTGCTACTACCTCGGGGGTTACACTGGATAGTGCAAGACGCACTGAAGTTATAATGAGTTCGGTTGCATTAATCATTGATGGTAGCAGCCTCGTTCATATTCTTGACAGTAGACTTGAAGAACAGCTTTTCCAACTATCCGGTCACTGTTCGGTGGTATTATGTTGTCGAGTCGCCCCATTGCAGAAAGCTGGAATTGTTGCTCTTGTCAAGAAAAGGACTTCTTACATGACACTTGCCATTGGTGATGGCGCGAACGACGTGTCAATGATCCAAAAGGCAGATGTGGGTGTTGGTATCAGTGGTCTAGAGGGTCGACAGGCTGTCATGGCGTCGGATTTTGCCATGGGGCAATTTCGATTCTTGGTTCCTCTTCTATTGGTCCATGGACATTGGAATTACCAGCGAATGAGCTACATGATCTTGTACAACTTTTACAGAAATGCAGTATTTGTGCTTGTTTTATTTTGGTATGTGCTATTTACTGGTTACTCGTTGACGACGGCGATCAACCAATGGAGCAGTGTACTCTACTCTATAATCTATACTTGTTTGCCCACAATTGTTGTTGGAATTCTTGACAAAGACTTGGGAAGAAGGACTCTTCTTAGTTATCCTCAGCTCTATGGAGCTGGCCATAGAGAAGAGAGCTACAACTCTAGATTGTTTTGGTTAACCATGATTGACACTGTGTGGCAAAGCATTGCTATTTTCTTCATCCCCCTCTTTGCATTCTGGGCTACCACGATCGACATTTCAGGCCTCGGAGATCTCTGGCTACTCGCCTCGGTCATTGTCGTCAACTTGCACTTGGCAATGGACGTGTTTCGATGGTATTCCATCACCCATGCTGTGATTTGGGGATCCACTCTTGCAACTGTCATTTGTGTCACTGTTCTTGATTCGATATTGTCGCTTCCCGGATATTGGGCGATATATCACGTGGCGGCCTCGGCTTCTTCTTGGCTATGTTTGTTGTCCATCGTCGTAGTAGCATTACTTCCTCGTATCGTCGTAAAATACCTATATCAATGTTACAGTCCATGTGACATCCAAATAGCAAGAGAGGCTGATAAATTTGGAAGGACAAGAGAACTGGGAGTTGTACAAACAGAGATAGTCCCAGTCCTCAACAATTCTTAA 3636 43.34 MASERPLLIVSPRTPQTISHDLHKPEPNRLGLFFAMDSGTLNENPPSTELAHRSFSRRSQSSLQSKNSIREVGSSEFGSRPVRHGSRGADSEAFSLSQKEISDEDARLIYIDDPEKTNERFEFSRNSIRTGKYSILTFLPRNLFEQFHRIAYIYFLVIAVLNQLPQLAVFGRGVSIMPLAFVLLVTAVKDAYEDWRRHRSDKIENNRLASVLVDGKFQDKKWKDVCVGEIIKIGSNGTIPCDMVLLSTSDSTGVAYVQTLNLDGESNLKTRYAKQETMSKMPDKEKIFGVIKCEKPNRNIYGFYANMEIDGKRLSLGPPNIVLRGCELKNTSWAVGVAVYAGRETKVMLNSSGAPSKRSRLETRMNVEIIILSFFLIALCTVVSVLAAVWFFRNREDLDVLPFFRDMDFSKDPPETYNYYGWGLEAFFVFLMSVIVFQVMIPISLYISMELVRVGQAYFMIRDAQMYDETSNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFRCASIWGVDYGGENASPFDEQNGYSIRVNGKVLRPKLAVKTDPELLQLSKSGKHTRDGRYIHDFFLALAACNTIVPLITETSDPSVQLLDYQGESPDEQALVYAAAAYGYMLIERTSGHIVIDIHGEKQRYNVLGMHEFDSDRKRMSVILGCPDTTFKVFVKGADNAMFKVMGENLNASIIQATKTHLHSYSSKGLRTLVIGMKELTSSDFAQWHAVFEEASTALIGRAAKLRKVASSIENNLSILGASGIEDKLQKGVPEAIEALRMAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINCNSVDSCQRSLEDAIIMSKRLATTSGVTLDSARRTEVIMSSVALIIDGSSLVHILDSRLEEQLFQLSGHCSVVLCCRVAPLQKAGIVALVKKRTSYMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMSYMILYNFYRNAVFVLVLFWYVLFTGYSLTTAINQWSSVLYSIIYTCLPTIVVGILDKDLGRRTLLSYPQLYGAGHREESYNSRLFWLTMIDTVWQSIAIFFIPLFAFWATTIDISGLGDLWLLASVIVVNLHLAMDVFRWYSITHAVIWGSTLATVICVTVLDSILSLPGYWAIYHVAASASSWLCLLSIVVVALLPRIVVKYLYQCYSPCDIQIAREADKFGRTRELGVVQTEIVPVLNNS 1211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3374973 3380318 + Sed0023182.1 Sed03g0546 706033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0546 1211 MobiDBLite consensus disorder prediction 40 74 - -
Sed03g0546 1211 NCBIfam HAD-IC family P-type ATPase 883 995 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed03g0546 1211 MobiDBLite consensus disorder prediction 1 26 - -
Sed03g0546 1211 FunFam Phospholipid-transporting ATPase 181 350 - -
Sed03g0546 1211 SUPERFAMILY Calcium ATPase, transmembrane domain M 120 1178 IPR023298 -
Sed03g0546 1211 SUPERFAMILY HAD-like 480 953 IPR036412 -
Sed03g0546 1211 Gene3D - 184 351 - -
Sed03g0546 1211 SFLD C1.7: P-type atpase like 477 963 - -
Sed03g0546 1211 Pfam Phospholipid-translocating P-type ATPase C-terminal 940 1179 IPR032630 -
Sed03g0546 1211 Pfam Cation transport ATPase (P-type) 601 677 - -
Sed03g0546 1211 PRINTS P-type cation-transporting ATPase superfamily signature 493 507 - -
Sed03g0546 1211 PRINTS P-type cation-transporting ATPase superfamily signature 912 931 - -
Sed03g0546 1211 SUPERFAMILY Calcium ATPase, transduction domain A 206 348 IPR008250 -
Sed03g0546 1211 ProSitePatterns E1-E2 ATPases phosphorylation site. 495 501 IPR018303 -
Sed03g0546 1211 FunFam Phospholipid-transporting ATPase 752 952 - -
Sed03g0546 1211 Gene3D - 597 734 IPR023299 GO:0000166(InterPro)
Sed03g0546 1211 NCBIfam phospholipid-translocating P-type ATPase 123 1187 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Sed03g0546 1211 FunFam Phospholipid-transporting ATPase 597 730 - -
Sed03g0546 1211 MobiDBLite consensus disorder prediction 39 94 - -
Sed03g0546 1211 Pfam Phospholipid-translocating ATPase N-terminal 109 175 IPR032631 -
Sed03g0546 1211 Gene3D - 750 952 IPR023214 -
Sed03g0546 1211 CDD P-type_ATPase_APLT_Dnf-like 125 1072 - -
Sed03g0546 1211 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 97 1179 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Sed03g0546 1211 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 499 766 IPR023299 GO:0000166(InterPro)
Sed03g0546 1211 SFLD p-type atpase 477 963 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0546 Sed-Chr3:3374973 Sed11g1422 Sed-Chr11:30107393 0.00E+00 dispersed
Sed03g2443 Sed-Chr3:21958870 Sed03g0546 Sed-Chr3:3374973 0.00E+00 transposed
Sed11g1418 Sed-Chr11:30071204 Sed03g0546 Sed-Chr3:3374973 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0546 K14802 - csv:101212953 2167.12