Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g0598 | ATGGCGTCCTTCTCGTTCTCCGATGACTACCACCACCAACTTCTGTTTTCACTCTCTGCATTCATCGTCTTCTTCTTCTTCTTCTTCCTCCAAAAACGCTCCTCCAAGCCACCGCTCAACCTCCCGCCGGGACCCCGCGGCTGGCCCCTCGTCGGAAACCTCTTCCAGGTCGCCCGCTCCGGCAAGTATTTCTTCGAATACGTAGAAGAAATCCGCCAGATCTACGGCCCGATCTTCACTCTCCGGATGGGCTCTCGCACCATGATCATCTTGTCCGGCGCCGACCTCGTCCACGAAGCCCTAATCAAGCGCGGCCCTACCTTCGCAAGCCGCCCGCCCGAAAACCCGACCCGAATCATCTTCAGCAGCAACAAATTCTCAGTCAACGCCGCCGTCTACGGCTCTCTCTGGCGCTCCCTCCGCCGCAACATGGTGGAGAACATGCTCTCCTCCAGTCGATTGAAGGAGTTTCGCGGCGTTCGAAAAAACGCCGTCGATAAACTCGTTCGACGCATCCGAGCCGACGCCGCCGTTAACGGCGGCGCTGTTTTGGTGTTGAAGAATGCTAGATTTGCTGTGTTTTGTATTCTCTTAGCGATGTGTTTTGGATTAGAAATGGACGAAGAATCGGTCGAGAAAATGGATCAGGTTCTTAAAACCGTTTTGAACACCGTGGATCCGAGAATCGACGATTTTCTTCCGATTCTGCGGCCGTTTTTCTCGAAACAGAGAAAACGCGCCATGGAAGTGAGAACAGAGCAGATCGATTTCATCGCACAGTTCATAAATCGAAGGAAAAAGGCAATTCAAAATCCAGGTTCGGACATTACCGCAACTTCATTTTCGTACCTCGATACGCTCTTTGATCTGAAGGTCGACGGCCGGAAATCCTCTCCGACGGAGGCGGAATTAGTGACTCTGTGCTCAGAATTCCTCAACGGCGGCGTCGACACGACCGCGACCGCAATCGAATGGGGAATCGCAGAGCTAATCGCAAACCCTAACATCCAGAACAAACTCCACGAAGAAATCAAACAATTAGTCGGCGATAGAACCGTAGAGGAATCGGATGTGGAGAAATTGCCGTACCTTCAAGCGATCGTGAAGGAATTGCTGAGAAGACATCCGCCGACGTACTTCACGCTGACGCATTCGGCGATCGAAGCGACGAAGCTCGGTGGATACGACATTCCGGTGGAGGCGAGCGTGGAGGTGTATTTGGCCGGAATCAGCAACGATCCGAGAGTGTGGAGGAATCCGGAGAGATTCGAGCCGGAGAGATTCGCCTCCGGCGAGGAGGATGTGGATCTGACAGGACTCAAAGGAATGAAGATGATTCCGTTCGGAATCGGAAGAAGAATCTGTCCAGGATTGGGAATGGCGACGATTCATGTTCATCTGATTCTGGCGAGGTTGATTCAGGAATTCGAATGGAGTTCGTATCCGGCGAACAGCAAACTGGATTTCACGAGGAAGTATGAATTTACTGTGGTGATGAAGAATCCTCTCAGAGCCATTGCAAGAACCAGAGATTAG | 1536 | 52.15 | MASFSFSDDYHHQLLFSLSAFIVFFFFFFLQKRSSKPPLNLPPGPRGWPLVGNLFQVARSGKYFFEYVEEIRQIYGPIFTLRMGSRTMIILSGADLVHEALIKRGPTFASRPPENPTRIIFSSNKFSVNAAVYGSLWRSLRRNMVENMLSSSRLKEFRGVRKNAVDKLVRRIRADAAVNGGAVLVLKNARFAVFCILLAMCFGLEMDEESVEKMDQVLKTVLNTVDPRIDDFLPILRPFFSKQRKRAMEVRTEQIDFIAQFINRRKKAIQNPGSDITATSFSYLDTLFDLKVDGRKSSPTEAELVTLCSEFLNGGVDTTATAIEWGIAELIANPNIQNKLHEEIKQLVGDRTVEESDVEKLPYLQAIVKELLRRHPPTYFTLTHSAIEATKLGGYDIPVEASVEVYLAGISNDPRVWRNPERFEPERFASGEEDVDLTGLKGMKMIPFGIGRRICPGLGMATIHVHLILARLIQEFEWSSYPANSKLDFTRKYEFTVVMKNPLRAIARTRD | 511 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 3621274 | 3622809 | - | Sed0001507.1 | Sed03g0598 | 706085 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g0598 | 511 | FunFam | Cytochrome P450 family protein | 35 | 511 | - | - | |
| Sed03g0598 | 511 | PRINTS | E-class P450 group I signature | 406 | 430 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0598 | 511 | PRINTS | E-class P450 group I signature | 455 | 478 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0598 | 511 | PRINTS | E-class P450 group I signature | 72 | 91 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0598 | 511 | PRINTS | E-class P450 group I signature | 303 | 320 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0598 | 511 | PRINTS | E-class P450 group I signature | 445 | 455 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0598 | 511 | PRINTS | E-class P450 group I signature | 96 | 117 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0598 | 511 | PRINTS | E-class P450 group I signature | 323 | 349 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0598 | 511 | PRINTS | E-class P450 group I signature | 192 | 210 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0598 | 511 | PRINTS | E-class P450 group I signature | 365 | 383 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0598 | 511 | CDD | CYP77_89 | 74 | 504 | - | - | |
| Sed03g0598 | 511 | Pfam | Cytochrome P450 | 42 | 500 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0598 | 511 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 23 | 508 | IPR051103 | GO:0016020(PANTHER)|GO:0016709(PANTHER) | |
| Sed03g0598 | 511 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 448 | 457 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed03g0598 | 511 | Gene3D | Cytochrome P450 | 35 | 511 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0598 | 511 | PRINTS | P450 superfamily signature | 314 | 331 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0598 | 511 | PRINTS | P450 superfamily signature | 446 | 455 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0598 | 511 | PRINTS | P450 superfamily signature | 455 | 466 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0598 | 511 | PRINTS | P450 superfamily signature | 366 | 377 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0598 | 511 | SUPERFAMILY | Cytochrome P450 | 42 | 510 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g0598 | Sed-Chr3:3621274 | Sed10g0618 | Sed-Chr10:4117234 | 3.10E-126 | dispersed | |
| Sed03g0598 | Sed-Chr3:3621274 | Sed03g0600 | Sed-Chr3:3630554 | 7.70E-226 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g0598 | K21995 | - | csv:101206763 | 851.662 |