Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g0600 | ATGGCGTCCTTCTCGTTCTCCGATGGCTACCACCACCAACTTCTCTTTTCACTCTCTGCATTCATCGTTGTCTTCTTCTTCTTCTTCCTCCAAAAACGCTCCTCCAAGCCACCGCTCAACCTCCCGCCGGGACCCGGAGGCTGGCCCCTCGTCGGAAACCTCTTCCAGCTCGCCGGCTCCGGCAAGTATTTCTTCGAATACGTCGAACAAATCAGCCAGATCTACGGCCCGATCTTCACTCTCCGGATGGGCTCTCGCACCATGATCCCGCCCGCCCGAAACCCGACCCGAACCATCTTCAGCAGCAACAAATTCTCCATCAACGCCGCCGTCTACGGCTCCCTCTGGCGCTCCCTCCGCCGCAACATGGTGGAGAACATGCTCTTCTCCACTCGATTGAAGGAGTTTAGCGGCGTTAGAATAAACGCCGTCGATAAACTCGTCGAACGGATCAGAGCCGACGCCGCCGTTTCCGTATTGAAGAATGCTAGATTTGCTGTGTTTTGTATTCTCTTAGCGATGTGTTTTGGATTGGAAATGGACGACGAATCGGTCGAGAAAATGGATCAAGTTCTCAAATCCGTTTTGAAAACCATCGATCCGAGAATCGACGATTTTCTTCCGATTCTGCGGCCGTTTTTCTCGAAACAGAGAAAACGCGCCATGGAAGTGAGAACAGAGCAGATCGATTTCATTGCACAGTTCTTAAACCGAAGGAAAAAAGCAATTCAAAATCCAGGTACGGACATTACCGCAACCTCATTTTCGTACCTCGATACGCTCTTCGATCTGAAGGTCGACGGCCGGAAATTCTCTCCGACGGAGGCGGAATTAGTGACTCTGTGCTCCGAATTCCTCAACGGCGGCGTCGACACGACCGCGACCGCAATCGAATGGGGAATCGCAGAGCTAATCGCGAACCCTAACATCCAGAACAAACTCCACGAAGAAATCAAACAATTAGTCGGCGATAGAACCGTAGAGGAATCGGATCTGGAGAAATTGCCGTACCTTCAAGCAGTAGCGAAGGAATTGCTGAGAAAACATCCACCGACGTACTTCACGCTCAAGCACTCGGCGATCGAGGCGACGAAGCTCGTGTGGAGGAATCCGGAGAAATTCCTGCCGGAGAGATTCATCTCCGGCGAGGAGGATGCGGATCTGACAGGAATCAAAGGTGTTAAGATGTTGCCGTTCGGAGCCGGAAGAAGAATCTGTCCAGGATTGGGAATGGCGACGGTTCATGTTCGCCTGATTCTGGCGAGGCTGATTCAGGAATTGGAATGGAGTTCGTATCCGGCGAACACCAAATTGGATTTCACGAAGAAGTTAGAGTTTACTGTGGTGATGAAGAATCCGCTCAGAGCCATTGCAAGAACCAGAGATTAG | 1389 | 51.48 | MASFSFSDGYHHQLLFSLSAFIVVFFFFFLQKRSSKPPLNLPPGPGGWPLVGNLFQLAGSGKYFFEYVEQISQIYGPIFTLRMGSRTMIPPARNPTRTIFSSNKFSINAAVYGSLWRSLRRNMVENMLFSTRLKEFSGVRINAVDKLVERIRADAAVSVLKNARFAVFCILLAMCFGLEMDDESVEKMDQVLKSVLKTIDPRIDDFLPILRPFFSKQRKRAMEVRTEQIDFIAQFLNRRKKAIQNPGTDITATSFSYLDTLFDLKVDGRKFSPTEAELVTLCSEFLNGGVDTTATAIEWGIAELIANPNIQNKLHEEIKQLVGDRTVEESDLEKLPYLQAVAKELLRKHPPTYFTLKHSAIEATKLVWRNPEKFLPERFISGEEDADLTGIKGVKMLPFGAGRRICPGLGMATVHVRLILARLIQELEWSSYPANTKLDFTKKLEFTVVMKNPLRAIARTRD | 462 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 3630554 | 3632073 | - | Sed0001855.1 | Sed03g0600 | 706087 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g0600 | 462 | Pfam | Cytochrome P450 | 365 | 452 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0600 | 462 | Pfam | Cytochrome P450 | 42 | 366 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0600 | 462 | PRINTS | P450 superfamily signature | 340 | 351 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0600 | 462 | PRINTS | P450 superfamily signature | 397 | 406 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0600 | 462 | PRINTS | P450 superfamily signature | 288 | 305 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0600 | 462 | PRINTS | P450 superfamily signature | 406 | 417 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0600 | 462 | CDD | CYP77_89 | 74 | 455 | - | - | |
| Sed03g0600 | 462 | Gene3D | Cytochrome P450 | 35 | 462 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0600 | 462 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 366 | 459 | IPR051103 | GO:0016020(PANTHER)|GO:0016709(PANTHER) | |
| Sed03g0600 | 462 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 399 | 408 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed03g0600 | 462 | PRINTS | E-class P450 group I signature | 396 | 406 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0600 | 462 | PRINTS | E-class P450 group I signature | 297 | 323 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0600 | 462 | PRINTS | E-class P450 group I signature | 277 | 294 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0600 | 462 | PRINTS | E-class P450 group I signature | 357 | 381 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0600 | 462 | PRINTS | E-class P450 group I signature | 72 | 91 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0600 | 462 | PRINTS | E-class P450 group I signature | 406 | 429 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0600 | 462 | SUPERFAMILY | Cytochrome P450 | 42 | 461 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g0600 | Sed-Chr3:3630554 | Sed10g0618 | Sed-Chr10:4117234 | 1.30E-94 | dispersed | |
| Sed03g0598 | Sed-Chr3:3621274 | Sed03g0600 | Sed-Chr3:3630554 | 7.70E-226 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g0600 | K21995 | - | csv:101206763 | 668.307 |