Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0603 | ATGGATTATTTTGTACATTCGTGGTTTGTTGCTTGCAGTCAAGTTTACATGGCCAAAGAATTAAAGACAGGTGAAATTGTTGCCCTGAAGAAGATACGAATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTCTAAAGAAACTCCATCATGAAAATGTAATAAAATTGAAAGAGATTGTGACATCTCCAGGTCCCGAGAAGGATGAACAAGGGAAGCCGGATGGTAACAAGTACAAAGGTGGTATCTACATGGTTTTCGAGTACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCTGGGATGAGATTTTCAGTTCCCCAAATCAAGTGCTACATGAGGCAACTTCTCACAGGACTTCATTATTGTCATGTAAATCATGTACTGCATAGGGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGCCTTGCTCGATCGTTTTCAAATGATCACAATGCAAATCTAACCAATCGTGTCATTACCTTATGGTATAGACCTCCCGAATTGCTGCTTGGGTCAACAAAATATGGTCCAGCTGTAGATATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTTTACATGGGAAGCCAATATTCCCTGGCAAGGATGAGCCGGAGCAATTGAATAAGATTTTTGAGCTATGCGGTGCCCCGGATGAAGTCAATTGGCCTGGGGTTTCTAAAATCCCTTGGTACAACAATTTCAAGCCCACAAGGCCAATGAAGAGACGTCTAAGAGACGTTTTCAGGCATTTTGATCGTCATGCTTTAGAATTGTTGGAGAAGATGCTCACTCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCCTTAGATGCAGAGTATTTTTGGACAGATCCATTACCTTGTGACCCTAAGAGTTTGCCCAAGTATGAGGCATCACACGAGTTCCAGACGAAGAAAAAACGTCAACAGCAACGCCAACAGGAAGAAACTGCAAAGCGACAGAAGTTGCAACACCCACAGCATTCCCGCCTTCCGCCAATTCAGCAGTCGGGGCAAGCCCATGCGCAGATGCGACCAGTACCGAACCAACCTCTTCATGGCTCTCAACCTGCCGTTGCTGGAGGACCTAGCCATCATTATGGGGGGAAGCCTCGTGGACCCCCAGGTCCCGGTAGGTATCCCTCAGGTGGAAATCCTTCTTCTGGATACAACCATCCAAGTCGTGGTGGTCAAGGTGGTGGCAGCTATGGCAATGCACAATATGCTCAAGGACGAGGCGCACCCTATGGGTCTGGTAACATGTCTGGTGCTGGTCCTCGAGGTGGAGCGGGTGGTGGCGGCAGTGGTTATGGCGTGGGAGCTCCAAATTACCCACAGAATGGTCCGTATGGTGGTAGTTCTGGTACTGGTCGTGGCTCCAACGTGATGGGCGGAAACCGAAACCAGCAATATGGGTGGCAACAATGA | 1485 | 46.73 | MDYFVHSWFVACSQVYMAKELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNHVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLRDVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQQEETAKRQKLQHPQHSRLPPIQQSGQAHAQMRPVPNQPLHGSQPAVAGGPSHHYGGKPRGPPGPGRYPSGGNPSSGYNHPSRGGQGGGSYGNAQYAQGRGAPYGSGNMSGAGPRGGAGGGGSGYGVGAPNYPQNGPYGGSSGTGRGSNVMGGNRNQQYGWQQ | 494 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3642509 | 3648533 | - | Sed0026973.2 | Sed03g0603 | 706090 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0603 | 494 | Gene3D | Phosphorylase Kinase; domain 1 | 11 | 97 | - | - | |
Sed03g0603 | 494 | SMART | serkin_6 | 11 | 300 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g0603 | 494 | SUPERFAMILY | Protein kinase-like (PK-like) | 12 | 308 | IPR011009 | - | |
Sed03g0603 | 494 | MobiDBLite | consensus disorder prediction | 466 | 494 | - | - | |
Sed03g0603 | 494 | CDD | STKc_CDK9_like | 13 | 300 | - | - | |
Sed03g0603 | 494 | MobiDBLite | consensus disorder prediction | 347 | 363 | - | - | |
Sed03g0603 | 494 | Pfam | Protein kinase domain | 12 | 300 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g0603 | 494 | Gene3D | Transferase(Phosphotransferase) domain 1 | 98 | 340 | - | - | |
Sed03g0603 | 494 | ProSiteProfiles | Protein kinase domain profile. | 1 | 300 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g0603 | 494 | FunFam | Cyclin-dependent kinase C-2 | 98 | 340 | - | - | |
Sed03g0603 | 494 | FunFam | Cyclin-dependent kinase C-2 | 10 | 97 | - | - | |
Sed03g0603 | 494 | MobiDBLite | consensus disorder prediction | 311 | 494 | - | - | |
Sed03g0603 | 494 | PANTHER | CELL DIVISION PROTEIN KINASE | 12 | 300 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Sed03g0603 | 494 | MobiDBLite | consensus disorder prediction | 403 | 424 | - | - | |
Sed03g0603 | 494 | MobiDBLite | consensus disorder prediction | 313 | 342 | - | - | |
Sed03g0603 | 494 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 135 | 147 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2860 | Sed-Chr1:24091676 | Sed03g0603 | Sed-Chr3:3642509 | 5.80E-237 | dispersed | |
Sed03g0603 | Sed-Chr3:3642509 | Sed13g0562 | Sed-Chr13:3905877 | 7.00E-91 | dispersed | |
Sed03g0602 | Sed-Chr3:3642509 | Sed03g0603 | Sed-Chr3:3642509 | 4.10E-251 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78868 | PF00069 | Pkinase | 3.30E-69 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0603 | K08819 | - | csv:101220936 | 842.802 |