Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0603 ATGGATTATTTTGTACATTCGTGGTTTGTTGCTTGCAGTCAAGTTTACATGGCCAAAGAATTAAAGACAGGTGAAATTGTTGCCCTGAAGAAGATACGAATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTCTAAAGAAACTCCATCATGAAAATGTAATAAAATTGAAAGAGATTGTGACATCTCCAGGTCCCGAGAAGGATGAACAAGGGAAGCCGGATGGTAACAAGTACAAAGGTGGTATCTACATGGTTTTCGAGTACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCTGGGATGAGATTTTCAGTTCCCCAAATCAAGTGCTACATGAGGCAACTTCTCACAGGACTTCATTATTGTCATGTAAATCATGTACTGCATAGGGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGCCTTGCTCGATCGTTTTCAAATGATCACAATGCAAATCTAACCAATCGTGTCATTACCTTATGGTATAGACCTCCCGAATTGCTGCTTGGGTCAACAAAATATGGTCCAGCTGTAGATATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTTTACATGGGAAGCCAATATTCCCTGGCAAGGATGAGCCGGAGCAATTGAATAAGATTTTTGAGCTATGCGGTGCCCCGGATGAAGTCAATTGGCCTGGGGTTTCTAAAATCCCTTGGTACAACAATTTCAAGCCCACAAGGCCAATGAAGAGACGTCTAAGAGACGTTTTCAGGCATTTTGATCGTCATGCTTTAGAATTGTTGGAGAAGATGCTCACTCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCCTTAGATGCAGAGTATTTTTGGACAGATCCATTACCTTGTGACCCTAAGAGTTTGCCCAAGTATGAGGCATCACACGAGTTCCAGACGAAGAAAAAACGTCAACAGCAACGCCAACAGGAAGAAACTGCAAAGCGACAGAAGTTGCAACACCCACAGCATTCCCGCCTTCCGCCAATTCAGCAGTCGGGGCAAGCCCATGCGCAGATGCGACCAGTACCGAACCAACCTCTTCATGGCTCTCAACCTGCCGTTGCTGGAGGACCTAGCCATCATTATGGGGGGAAGCCTCGTGGACCCCCAGGTCCCGGTAGGTATCCCTCAGGTGGAAATCCTTCTTCTGGATACAACCATCCAAGTCGTGGTGGTCAAGGTGGTGGCAGCTATGGCAATGCACAATATGCTCAAGGACGAGGCGCACCCTATGGGTCTGGTAACATGTCTGGTGCTGGTCCTCGAGGTGGAGCGGGTGGTGGCGGCAGTGGTTATGGCGTGGGAGCTCCAAATTACCCACAGAATGGTCCGTATGGTGGTAGTTCTGGTACTGGTCGTGGCTCCAACGTGATGGGCGGAAACCGAAACCAGCAATATGGGTGGCAACAATGA 1485 46.73 MDYFVHSWFVACSQVYMAKELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNHVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLRDVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQQEETAKRQKLQHPQHSRLPPIQQSGQAHAQMRPVPNQPLHGSQPAVAGGPSHHYGGKPRGPPGPGRYPSGGNPSSGYNHPSRGGQGGGSYGNAQYAQGRGAPYGSGNMSGAGPRGGAGGGGSGYGVGAPNYPQNGPYGGSSGTGRGSNVMGGNRNQQYGWQQ 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3642509 3648533 - Sed0026973.2 Sed03g0603 706090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0603 494 Gene3D Phosphorylase Kinase; domain 1 11 97 - -
Sed03g0603 494 SMART serkin_6 11 300 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0603 494 SUPERFAMILY Protein kinase-like (PK-like) 12 308 IPR011009 -
Sed03g0603 494 MobiDBLite consensus disorder prediction 466 494 - -
Sed03g0603 494 CDD STKc_CDK9_like 13 300 - -
Sed03g0603 494 MobiDBLite consensus disorder prediction 347 363 - -
Sed03g0603 494 Pfam Protein kinase domain 12 300 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0603 494 Gene3D Transferase(Phosphotransferase) domain 1 98 340 - -
Sed03g0603 494 ProSiteProfiles Protein kinase domain profile. 1 300 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0603 494 FunFam Cyclin-dependent kinase C-2 98 340 - -
Sed03g0603 494 FunFam Cyclin-dependent kinase C-2 10 97 - -
Sed03g0603 494 MobiDBLite consensus disorder prediction 311 494 - -
Sed03g0603 494 PANTHER CELL DIVISION PROTEIN KINASE 12 300 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed03g0603 494 MobiDBLite consensus disorder prediction 403 424 - -
Sed03g0603 494 MobiDBLite consensus disorder prediction 313 342 - -
Sed03g0603 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2860 Sed-Chr1:24091676 Sed03g0603 Sed-Chr3:3642509 5.80E-237 dispersed
Sed03g0603 Sed-Chr3:3642509 Sed13g0562 Sed-Chr13:3905877 7.00E-91 dispersed
Sed03g0602 Sed-Chr3:3642509 Sed03g0603 Sed-Chr3:3642509 4.10E-251 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78868 PF00069 Pkinase 3.30E-69 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0603 K08819 - csv:101220936 842.802