Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0609 ATGGCAGCGCCAAACCCTCGCGCCAGTCGGTCCAGGTCTCACAGAGATGCCCCGCCATTGGAGAAGATGGACGCTGCTTGCACTTGGGACGCCATTGAATGGACCAAGATCGAGCCCGTTCCTCGGTCCGTATCGCGCGTCAACTTAGATTGCTTGCTTGAAGCCGAACAAGTGATCGCTGAGGGCTATGGTGTTGTTCTTGTGAATACTGATGAAGCGGGTACCTTGTTCGTAACCAATTTTCGTCTTCTATTTCTAAGTGAAGGAACGATGGATGTTATTGCCCTTGGCACTATACCACTGGCGACAATTGATAAATTCAACAAAATAGTTGTGAAGACAAATTCTGTCTCTCGCCAATCTGAAAAGTCTTCATCTAGACGACTTCTTCAGGTCATTGGAAATGACATGAGAATTATTGTCTTTGGTTTTCGGCCAAGAACAAAACAGAGGCGCAAAGTATATGATGCATTATTGAGGTGTATGAAACCTGGAAGAATATGGGATTTATATGCATTCAAGTCTGGGCCATCCAAGTATAGTAATACAGACCCAAAAGTTCGCTTGCTAAATGAGTATTTTCGGCTTCTTGGAAAGGGTTCCCTGTGTGCGTCAATGAGTATGATTGAAGATGGATCATTTACACTGTCGAACAAATTCTGGAGAATAACTAACATCAATTCCAGTTACACTCTGTCTCAAAGTTATCCATTTGCATTAGTTGTTCCAAAACACATTAGTTATTATTTTTTTGATCCAAGGATTTCCAGCATTCACTTTTTTGATGAAGAACTGTTGCAGGCTTCTACCTTTCGTGCTAGAGGTCGTTTGCCTGTTGTTTCATGGTGCAATCCTGGTAGTGGAGCTGTTCTTGCACGCTCATCCCAACCTTTAGCTGGTCTTATGATGAATATGAGAAGTAATACTGATGAAAAGCTTGTTGCTGCGCTTTGCTCACATCTTCCTGATGTTCAAGGGTCATCACGCAGGAAGCTTTATATAGCTGATGCAAGACCTAGAAAAAATGCTTTAGCAAATGGAGCTATGGGAGGTGGCTCAGAATCTTCATCAAATTATTTTCAATCGGAGATAGTTTTTTTTGGGATTGACAACATACATGCAATGAGGGAAAGTCTTACTCGGCTTAGAGAGTACTTGGATACTCATGGTACAAGATCATCTGATGGAATGTCGTCATTTTTGAGACATGGTGATTGGACTTGGGGTGGAGGTAATCTTAGTAGCATGTCTGCATCTGTATCAACACTGGGAGATAGTGGCTGGCTAATCCATGTTCAAAGCGTCTTGGCTGGTTCTGCATGGATTGCTGCACGTGTTGCTTTAGAAAAAGCAACGGTGCTAGTTCATTGCAGTGATGGCTGGGACAGAACATCACAACTAGTTTCACTTGCTAGCTTACTACTCGATCCTTATTATCGGACGTTCACTGGATTTCAGGCACTGGTTGAAAAGGATTGGCTGGCATTTGGCCATCCTTTCTCAGATCGGTCTGGCACGCCAACCATAGCAGGAAGTGGTAACATGCCGTATGAACTCTCTAGGCAGTCTTCAACTGGAAGTTTATCTTCTTCACCTGTGCGTCAGCCATCGGGATCATTCACTTCTCAAGCTTCCAGTCCTCATCCACAAACCTCGAACAATTGTTCTCCCATATTTTTACAGTGGGTTGACTGTGTTTCACAACTTCTGCGCATGTATCCCTTCGCTTTTGAGTTCTCTTCGGCATTCCTGGTGGATCTCTTGGATTGCATGCTTTCCTGTCGCTTTGGGAACTTCTTGTGCAATTGTGAAAAGGAGCGGCAGCAGTGTGCAATTTCTGAGGTTTGTGGCTGTCTATGGACGTATTTAGCCGGTATACGAGCTTCGGAAGGAACTTCACATGTGCATCATAACCTCTTCTATGATCCAACCAAACATTCAGGTCCTCTTTTACCTCCTGCAGCAGCTCTAGCTCCAACTCTCTGGCCACAGTTCCATCTTCGTTGGTCTTGTCCTAAAGAATCCCAAGCTGGAGAACTTGAAGCCAGATGCAGGGAAATGGCTATCAAATTCTCTGAAATGCAGAAGGACAAAGAAATAGCCGAGCGAAAAGCCCAAGAGACGACGGCTGCCATGGAATCATTAAAAGCAGAGTTGCAAAACGAGAAACAGTCATGTATATCTGCTATGAATGTAGCTAAAAGTGCAAGCAAAGAATGTGATGCCATGAAAAGGGCAATTCAGTCTCTAGGTTGCAGGGTTCAGGTCTCAAGTAATGGGTATTGTACTATCGACATTGAAGGCGATCTGATGAAATCCAATCCGAAAAGTCGTCCTGCTTCAATAAGGACCTCACATCGTTCACTGCCTGTTAGTGAAGAGAATGATGTCTCGCTCTCTATAACAGTTACATCAGATGATGATGCACCAAGCAACCCTCTCGGTCACGTTTGTGAAGCTCTTTGCCCGTTGCGCACTCGGGATGGAGGGTGCCGGTGGCCTGATGCGGGTTGTGCTCATTTGGGTAGCCAGTTTGTTGGACTAAAGGCAAATTATGATGCATTCGATCAACTATCCATATATGATGGTTATTTTAAGCCAGAATAA 2607 44.27 MAAPNPRASRSRSHRDAPPLEKMDAACTWDAIEWTKIEPVPRSVSRVNLDCLLEAEQVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGTMDVIALGTIPLATIDKFNKIVVKTNSVSRQSEKSSSRRLLQVIGNDMRIIVFGFRPRTKQRRKVYDALLRCMKPGRIWDLYAFKSGPSKYSNTDPKVRLLNEYFRLLGKGSLCASMSMIEDGSFTLSNKFWRITNINSSYTLSQSYPFALVVPKHISYYFFDPRISSIHFFDEELLQASTFRARGRLPVVSWCNPGSGAVLARSSQPLAGLMMNMRSNTDEKLVAALCSHLPDVQGSSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESLTRLREYLDTHGTRSSDGMSSFLRHGDWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALEKATVLVHCSDGWDRTSQLVSLASLLLDPYYRTFTGFQALVEKDWLAFGHPFSDRSGTPTIAGSGNMPYELSRQSSTGSLSSSPVRQPSGSFTSQASSPHPQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSCRFGNFLCNCEKERQQCAISEVCGCLWTYLAGIRASEGTSHVHHNLFYDPTKHSGPLLPPAAALAPTLWPQFHLRWSCPKESQAGELEARCREMAIKFSEMQKDKEIAERKAQETTAAMESLKAELQNEKQSCISAMNVAKSASKECDAMKRAIQSLGCRVQVSSNGYCTIDIEGDLMKSNPKSRPASIRTSHRSLPVSEENDVSLSITVTSDDDAPSNPLGHVCEALCPLRTRDGGCRWPDAGCAHLGSQFVGLKANYDAFDQLSIYDGYFKPE 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3675532 3693203 + Sed0026233.1 Sed03g0609 706096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0609 868 ProSiteProfiles Myotubularin phosphatase domain. 198 666 IPR010569 -
Sed03g0609 868 SMART gram2001c 43 111 IPR004182 -
Sed03g0609 868 SUPERFAMILY PH domain-like 51 174 - -
Sed03g0609 868 MobiDBLite consensus disorder prediction 519 552 - -
Sed03g0609 868 PANTHER MYOTUBULARIN-RELATED 51 801 IPR030564 GO:0004438(PANTHER)|GO:0106018(PANTHER)
Sed03g0609 868 Coils Coil 691 725 - -
Sed03g0609 868 CDD PTP-MTM-like 275 568 - -
Sed03g0609 868 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 215 670 IPR029021 -
Sed03g0609 868 Pfam Myotubularin-like phosphatase domain 215 608 IPR010569 -
Sed03g0609 868 ProSitePatterns Tyrosine specific protein phosphatases active site. 455 465 IPR016130 GO:0016311(InterPro)
Sed03g0609 868 Gene3D - 63 162 IPR011993 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2863 Sed-Chr1:24152132 Sed03g0609 Sed-Chr3:3675532 0.00E+00 dispersed
Sed01g2862 Sed-Chr1:24152132 Sed03g0609 Sed-Chr3:3675532 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0609 K18081 - csv:101204839 1510.35