Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0651 ATGAATTCCATATCCTTTTCATTACCTCTTTTCAGCCTTGTTTTGCCTTTCTTGCTCTTGTTTCTGGTGAAGTCTTCTGTTGTTTCTGCTTATCCTGATGAATGGTTCTTTCACTGCAAAGAAACGACGAAATGCGGGGATATTGGTTTTAAGGAATTTCCTCTCTGGAGAAATAATAATAATGAAACACAAATTTGTGGTTATTCAGAGTCCATGGTGGTCAATTGCAAGGGAAGCGACACAACCATAGAAATTTTGGGAGCACAATACAGACTCCTGGGTTTTGATAACAAAGATCAAATTCTTATAATAGCTAAACTTGAGATTCCAATTCCAGATGCATTTTGTTCTAAAGATCACAAAATTCTGCCAAGATCTATCTATGCAATGATTCCTGTAAATAAATGCAGGGATAATACCCAGCACTCAGCAAAACCTGCTCGTTCTGATACTGAATTTAGGTACATACCATTTGAAAATAGGACCCCATATTCTCCTGGTGATGATTGTCAGTTAAGTGTAATAGTGCCAATTTCAGCATCGTTGTTAACAAAACTTGATGACGATTTGGGAAAGGTAGCAAAGAATATCACAGAAGAGTTTAAATCTGAGCGGAAGGTAGATGTTAAGGCTCAACTACGTGAAAGCTGCAGTGTTGTTAATCGTGTTTATGGTTATGACTTGGAATTGAGTCAAACCAGATGCTACTGCCAATCTTCATCTCATGAGTTTGAACCCTGTCCTCCCCCACCACCAGAAAAGGAGGGAAAAGCAGGAGCCAATCAAGTCGAGCGGTGTTGTTCAAACCCAAGTTTGAGTGATTTCAAATGTCATTGCTCGGATAGTGCTTTCAAAAAAGGCAAGTCAAAGAGGCCCTTTATAATTGGTGTTTCAATTGGAGGGGCATGTTTGGTTGCAACAATTTTAGGATGCTGCATTTGTTACTGTTTGAAAAGAAAGAAAAAGCATCCCATTACAAGCAGAAAAGGCCCTTCTCCTCTTGTTTCTAACTCTCTTTCAAACAATGATATGGCTCCTCCTACTCTCCTTTCAAACTCCTTTCAAACTCATAGCATTCCCTCTTATCCCTCTTCCAAATCTGACCTTGCCTCCAACCATGGAACTATTCGAGTATTCAACTATGCCGATCTCGAAAAGGCTACCGGTAATTTTAGCCGTTCTCGAGAGCTTGGTGATGGAGGATTCGGCATGGTTTACTATGGGATGCTTCAAGATGGGCGTGAAGTTGCTGTGAAGCGACTGTATGAGCATAATTGCAAACGTGTGGAACAATACAGGAATGAAATAGACATCCTTGCTCATTTACAACACAAAAACCTTGTCAAACTCTATGGCTGCACCTCCGAATATAGCCAAGGCCTTCTCCTTGTTTACGAATTTATTCCCAACGGTACGGTAGCCGACCATCTCCACGGATCACGGGCAAAGTTTGGTTTGCTCAGTTGGCCTATACGGTTGCGAATTGCCATCGAAACAGCGAATGCACTCGTGTACCTCCATCGCTCTGAAATCATCCACCGCGACGTCAAAGCCAACAACATTCTCCTTGACAACAACTTCACTGTCAAAGTTGCTGATTTTGGCCTTTCGAGGTTGTTCTCTAACGATGTAACTCACGTGTCCACTACCCCGCAAGGCACGCCTGGCTACGTCGATCCTGAGTATTATCAATGTTATCAACTCACTACGAAGAGCGATGTATACAGCTTTGGAGTGGTTCTTATCGAGCTCATATCGTCGCTCAAAGCGGTTGACATGGATAGGAAACGACAAGATATCAATTTGAGCAATATGGCATTGAGTAAAATACAAACTCAGGCATTGAATGAGTTGATCGATCCGAAGCTCGACTTCGACAAGAATCATGTAGTTATGAGGGCGATAACATCAGTTGCGGAGCTGGCTTTTCGCTGCCTTCAACAGGAAAAGGACATGAGGCCCTCAATGGAAGAAGTGGTGGAAGAACTAAGGGATATTGAGAATGACAAATTCAGTTTCGAGTTGACTAAGTTGTCGATATAG 2043 42.0 MNSISFSLPLFSLVLPFLLLFLVKSSVVSAYPDEWFFHCKETTKCGDIGFKEFPLWRNNNNETQICGYSESMVVNCKGSDTTIEILGAQYRLLGFDNKDQILIIAKLEIPIPDAFCSKDHKILPRSIYAMIPVNKCRDNTQHSAKPARSDTEFRYIPFENRTPYSPGDDCQLSVIVPISASLLTKLDDDLGKVAKNITEEFKSERKVDVKAQLRESCSVVNRVYGYDLELSQTRCYCQSSSHEFEPCPPPPPEKEGKAGANQVERCCSNPSLSDFKCHCSDSAFKKGKSKRPFIIGVSIGGACLVATILGCCICYCLKRKKKHPITSRKGPSPLVSNSLSNNDMAPPTLLSNSFQTHSIPSYPSSKSDLASNHGTIRVFNYADLEKATGNFSRSRELGDGGFGMVYYGMLQDGREVAVKRLYEHNCKRVEQYRNEIDILAHLQHKNLVKLYGCTSEYSQGLLLVYEFIPNGTVADHLHGSRAKFGLLSWPIRLRIAIETANALVYLHRSEIIHRDVKANNILLDNNFTVKVADFGLSRLFSNDVTHVSTTPQGTPGYVDPEYYQCYQLTTKSDVYSFGVVLIELISSLKAVDMDRKRQDINLSNMALSKIQTQALNELIDPKLDFDKNHVVMRAITSVAELAFRCLQQEKDMRPSMEEVVEELRDIENDKFSFELTKLSI 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3949703 3957097 - Sed0014206.1 Sed03g0651 706138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0651 680 Gene3D Phosphorylase Kinase; domain 1 363 467 - -
Sed03g0651 680 Gene3D Transferase(Phosphotransferase) domain 1 468 677 - -
Sed03g0651 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0651 680 ProSiteProfiles Protein kinase domain profile. 391 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0651 680 FunFam Wall-associated receptor kinase-like 20 468 675 - -
Sed03g0651 680 ProSitePatterns Protein kinases ATP-binding region signature. 397 419 IPR017441 GO:0005524(InterPro)
Sed03g0651 680 CDD STKc_IRAK 397 666 - -
Sed03g0651 680 SUPERFAMILY Protein kinase-like (PK-like) 367 668 IPR011009 -
Sed03g0651 680 SMART serkin_6 391 672 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0651 680 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 33 671 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Sed03g0651 680 Pfam Protein kinase domain 392 661 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0651 Sed-Chr3:3949703 Sed06g0838 Sed-Chr6:9127490 1.70E-124 dispersed
Sed03g0651 Sed-Chr3:3949703 Sed06g1431 Sed-Chr6:39091477 4.40E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78870 PF00069 Pkinase 2.80E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0651 - - - 0.0