Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0665 | ATGATTGGTCAACTGAGTATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCCTGGGGAAATGCCTTCGGTAGTCGACTCGATACGGGCATATCGCCTATTATAAAAGTAGATGACTGCATAGAAAATAAACCTGAGTTCGTTCCTTTTGAATCGATGGATCATGTTGAGAGCAGTCAAGAAATGAACAATCCAGTTGATGATAAGGCTCAAAGACGTTTAGCACAAAACCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGTTGGAGCTGGAGCTAGAAAGAACCAAGCACATGGGTCTATACACAAGCGGCTTAGTAGATACCAGCCACTTGGGGTTCGGTGGATTGGTAAACCCAGGGATTGCTGCATTTGAGAGGGAATACAAACACTGGGTCGAAGAGCAACAGAGGCAGGTCACTGGACTCAGAAATGCGTTACAAATTCATGTAACCGATATCGAGCTCCAAATTTTAGTTGAGAGCAGCTTGAAGCACTACCACAATCTGTTTGTCATTAAGGCAAACGCTGCAAAGGCTGATGTATTTTATATAATGTCTGGTGTATGGAGAACATCAGCGGAGCGTTTATTCCTCTGGATCGGAGGATTTCGCCCATCAGAGCTACTAAAGGTTCTCAAGCCATACTTTGAGCCATTAAACGAACAACAAAAGGCCAATATCAACAATTTACAACATTCGTCTCGACAAGCTGAAGACGCTCTCTCACACGGAATGGAAAAACTGCACCATAATCTATCCTGCAGCATTGCCAATGATCTTCTAGGAAGCTATATTTCTCAGATGGGCGATGGGATGGAGAACTTTGTAAGCCAGGCAGATCATCTCCGGCAACAAGCTTTGAAGAGAATGTCTCACATCCTACCCGCCAAACAAGCAGCCCAAGGCTTGCTCGCTTTGGGCGAGTACTTTCATCGCCTCCGTGTTCTTAGTTCCCTTTGGGCCACTCGACCTTGCGAACCAACCCAGCCAGCCTAG | 1083 | 45.52 | MIGQLSMSSSSTQLYASRMGIYEPFHQINSWGNAFGSRLDTGISPIIKVDDCIENKPEFVPFESMDHVESSQEMNNPVDDKAQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLELELERTKHMGLYTSGLVDTSHLGFGGLVNPGIAAFEREYKHWVEEQQRQVTGLRNALQIHVTDIELQILVESSLKHYHNLFVIKANAAKADVFYIMSGVWRTSAERLFLWIGGFRPSELLKVLKPYFEPLNEQQKANINNLQHSSRQAEDALSHGMEKLHHNLSCSIANDLLGSYISQMGDGMENFVSQADHLRQQALKRMSHILPAKQAAQGLLALGEYFHRLRVLSSLWATRPCEPTQPA | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4044539 | 4050834 | + | Sed0014212.4 | Sed03g0665 | 706152 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0665 | 360 | Coils | Coil | 249 | 269 | - | - | |
Sed03g0665 | 360 | SMART | brlzneu | 77 | 140 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0665 | 360 | Gene3D | - | 80 | 128 | - | - | |
Sed03g0665 | 360 | SUPERFAMILY | Leucine zipper domain | 81 | 114 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0665 | 360 | Pfam | bZIP transcription factor | 80 | 110 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0665 | 360 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 84 | 99 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0665 | 360 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 79 | 123 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0665 | 360 | ProSiteProfiles | DOG1 domain profile. | 150 | 352 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed03g0665 | 360 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 7 | 356 | - | - | |
Sed03g0665 | 360 | Coils | Coil | 100 | 127 | - | - | |
Sed03g0665 | 360 | FunFam | BZIP family transcription factor | 80 | 129 | - | - | |
Sed03g0665 | 360 | Pfam | Seed dormancy control | 168 | 242 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0665 | Sed-Chr3:4044539 | Sed03g0668 | Sed-Chr3:4045759 | 1.20E-204 | dispersed | |
Sed03g0665 | Sed-Chr3:4044539 | Sed03g0666 | Sed-Chr3:4044539 | 3.20E-202 | tandem | |
Sed11g2299 | Sed-Chr11:36090263 | Sed03g0665 | Sed-Chr3:4044539 | 1.20E-153 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37760 | PF14144 | DOG1 | 1.00E-26 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0665 | K14431 | - | csv:101217648 | 573.933 |