Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0665 ATGATTGGTCAACTGAGTATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCCTGGGGAAATGCCTTCGGTAGTCGACTCGATACGGGCATATCGCCTATTATAAAAGTAGATGACTGCATAGAAAATAAACCTGAGTTCGTTCCTTTTGAATCGATGGATCATGTTGAGAGCAGTCAAGAAATGAACAATCCAGTTGATGATAAGGCTCAAAGACGTTTAGCACAAAACCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGTTGGAGCTGGAGCTAGAAAGAACCAAGCACATGGGTCTATACACAAGCGGCTTAGTAGATACCAGCCACTTGGGGTTCGGTGGATTGGTAAACCCAGGGATTGCTGCATTTGAGAGGGAATACAAACACTGGGTCGAAGAGCAACAGAGGCAGGTCACTGGACTCAGAAATGCGTTACAAATTCATGTAACCGATATCGAGCTCCAAATTTTAGTTGAGAGCAGCTTGAAGCACTACCACAATCTGTTTGTCATTAAGGCAAACGCTGCAAAGGCTGATGTATTTTATATAATGTCTGGTGTATGGAGAACATCAGCGGAGCGTTTATTCCTCTGGATCGGAGGATTTCGCCCATCAGAGCTACTAAAGGTTCTCAAGCCATACTTTGAGCCATTAAACGAACAACAAAAGGCCAATATCAACAATTTACAACATTCGTCTCGACAAGCTGAAGACGCTCTCTCACACGGAATGGAAAAACTGCACCATAATCTATCCTGCAGCATTGCCAATGATCTTCTAGGAAGCTATATTTCTCAGATGGGCGATGGGATGGAGAACTTTGTAAGCCAGGCAGATCATCTCCGGCAACAAGCTTTGAAGAGAATGTCTCACATCCTACCCGCCAAACAAGCAGCCCAAGGCTTGCTCGCTTTGGGCGAGTACTTTCATCGCCTCCGTGTTCTTAGTTCCCTTTGGGCCACTCGACCTTGCGAACCAACCCAGCCAGCCTAG 1083 45.52 MIGQLSMSSSSTQLYASRMGIYEPFHQINSWGNAFGSRLDTGISPIIKVDDCIENKPEFVPFESMDHVESSQEMNNPVDDKAQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLELELERTKHMGLYTSGLVDTSHLGFGGLVNPGIAAFEREYKHWVEEQQRQVTGLRNALQIHVTDIELQILVESSLKHYHNLFVIKANAAKADVFYIMSGVWRTSAERLFLWIGGFRPSELLKVLKPYFEPLNEQQKANINNLQHSSRQAEDALSHGMEKLHHNLSCSIANDLLGSYISQMGDGMENFVSQADHLRQQALKRMSHILPAKQAAQGLLALGEYFHRLRVLSSLWATRPCEPTQPA 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4044539 4050834 + Sed0014212.4 Sed03g0665 706152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0665 360 Coils Coil 249 269 - -
Sed03g0665 360 SMART brlzneu 77 140 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0665 360 Gene3D - 80 128 - -
Sed03g0665 360 SUPERFAMILY Leucine zipper domain 81 114 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0665 360 Pfam bZIP transcription factor 80 110 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0665 360 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 84 99 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0665 360 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 123 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0665 360 ProSiteProfiles DOG1 domain profile. 150 352 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed03g0665 360 PANTHER TRANSCRIPTION FACTOR TGA9 7 356 - -
Sed03g0665 360 Coils Coil 100 127 - -
Sed03g0665 360 FunFam BZIP family transcription factor 80 129 - -
Sed03g0665 360 Pfam Seed dormancy control 168 242 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0665 Sed-Chr3:4044539 Sed03g0668 Sed-Chr3:4045759 1.20E-204 dispersed
Sed03g0665 Sed-Chr3:4044539 Sed03g0666 Sed-Chr3:4044539 3.20E-202 tandem
Sed11g2299 Sed-Chr11:36090263 Sed03g0665 Sed-Chr3:4044539 1.20E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37760 PF14144 DOG1 1.00E-26 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0665 K14431 - csv:101217648 573.933