Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0669 ATGATTGGTCAACTGAGTATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCCTGGGGAAATGCCTTCGGTAGTCGACTCGATACGGGCATATCGCCTATTATAAAAGTAGATGACTGCATAGAAAATAAACCTGAGTTCGTTCCTTTTGAATCGATGGATCATGTTGAGAGCAGTCAAGAAATGAACAATCCAGTTGATGATAAGGCTCAAAGACGTTTAGCACAAAACCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGTTGGAGCTGGAGCTAGAAAGAACCAAGCACATGGGTCTATACACAAGCGGCTTAGTAGATACCAGCCACTTGGGGTTCGGTGGATTGGTAAACCCAGGGATTGCTGCATTTGAGAGGGAATACAAACACTGGGTCGAAGAGCAACAGAGGCAGGTCACTGGACTCAGAAATGCGTTACAAATTCATGTAACCGATATCGAGCTCCAAATTTTAGTTGAGAGCAGCTTGAAGCACTACCACAATCTGTTTGTCATTAAGGCAAACGCTGCAAAGGCTGATGTATTTTATATAATGTCTGGTGTATGGAGAACATCAGCGGAGCGTTTATTCCTCTGGATCGGAGGATTTCGCCCATCAGAGCTACTAAAGGTTCTCAAGCCATACTTTGAGCCATTAAACGAACAACAAAAGGCCAATATCAACAATTTACAACATTCGTCTCGACAAGCTGAAGACGCTCTCTCACACGGAATGGAAAAACTGCACCATAATCTATCCTGCAGCATTGCCAATGATCTTCTAGGAAGCTATATTTCTCAGATGGGCGATGGGATGGAGAACTTTGTAAGCCAGCCGAGTGTGTGTTGCTTATTTCTTGAACAGGCAGATCATCTCCGGCAACAAGCTTTGAAGAGAATGTCTCACATCCTACCCGCCAAACAAGCAGCCCAAGGCTTGCTCGCTTTGGGCGAGTACTTTCATCGCCTCCGTGTTCTTAGTTCCCTTTGGGCCACTCGACCTTGCGAACCAACCCAGCCAGCCTAG 1113 45.46 MIGQLSMSSSSTQLYASRMGIYEPFHQINSWGNAFGSRLDTGISPIIKVDDCIENKPEFVPFESMDHVESSQEMNNPVDDKAQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLELELERTKHMGLYTSGLVDTSHLGFGGLVNPGIAAFEREYKHWVEEQQRQVTGLRNALQIHVTDIELQILVESSLKHYHNLFVIKANAAKADVFYIMSGVWRTSAERLFLWIGGFRPSELLKVLKPYFEPLNEQQKANINNLQHSSRQAEDALSHGMEKLHHNLSCSIANDLLGSYISQMGDGMENFVSQPSVCCLFLEQADHLRQQALKRMSHILPAKQAAQGLLALGEYFHRLRVLSSLWATRPCEPTQPA 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4045759 4050834 + Sed0014212.2 Sed03g0669 706156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0669 370 Gene3D - 80 128 - -
Sed03g0669 370 PANTHER TRANSCRIPTION FACTOR TGA9 7 366 - -
Sed03g0669 370 Pfam Seed dormancy control 168 242 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed03g0669 370 Coils Coil 249 269 - -
Sed03g0669 370 ProSiteProfiles DOG1 domain profile. 150 362 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed03g0669 370 Pfam bZIP transcription factor 80 110 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0669 370 SMART brlzneu 77 140 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0669 370 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 84 99 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0669 370 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 123 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0669 370 FunFam BZIP family transcription factor 80 129 - -
Sed03g0669 370 Coils Coil 100 127 - -
Sed03g0669 370 SUPERFAMILY Leucine zipper domain 81 114 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0666 Sed-Chr3:4044539 Sed03g0669 Sed-Chr3:4045759 1.00E-211 dispersed
Sed03g0667 Sed-Chr3:4045577 Sed03g0669 Sed-Chr3:4045759 1.00E-211 dispersed
Sed03g0669 Sed-Chr3:4045759 Sed03g0671 Sed-Chr3:4046145 2.20E-174 dispersed
Sed03g0668 Sed-Chr3:4045759 Sed03g0669 Sed-Chr3:4045759 3.20E-202 tandem
Sed03g0669 Sed-Chr3:4045759 Sed03g0670 Sed-Chr3:4046145 1.00E-211 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37764 PF14144 DOG1 1.10E-26 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0669 K14431 - csv:101217648 595.504