Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0670 | ATGGCCGTATTGTCTTTTTCACCTCTTACGTTTGTTTCTCTTTCCATCTTTTCAGTTCATTTTACTCTTATGATTGGTCAACTGAGTATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCCTGGGGAAATGCCTTCGGTAGTCGACTCGATACGGGCATATCGCCTATTATAAAAGTAGATGACTGCATAGAAAATAAACCTGAGTTCGTTCCTTTTGAATCGATGGATCATGTTGAGAGCAGTCAAGAAATGAACAATCCAGTTGATGATAAGGCTCAAAGACGTTTAGCACAAAACCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGTTGGAGCTGGAGCTAGAAAGAACCAAGCACATGGGTCTATACACAAGCGGCTTAGTAGATACCAGCCACTTGGGGTTCGGTGGATTGGTAAACCCAGGGATTGCTGCATTTGAGAGGGAATACAAACACTGGGTCGAAGAGCAACAGAGGCAGGTCACTGGACTCAGAAATGCGTTACAAATTCATGTAACCGATATCGAGCTCCAAATTTTAGTTGAGAGCAGCTTGAAGCACTACCACAATCTGTTTGTCATTAAGGCAAACGCTGCAAAGGCTGATGTATTTTATATAATGTCTGGTGTATGGAGAACATCAGCGGAGCGTTTATTCCTCTGGATCGGAGGATTTCGCCCATCAGAGCTACTAAAGGTTCTCAAGCCATACTTTGAGCCATTAAACGAACAACAAAAGGCCAATATCAACAATTTACAACATTCGTCTCGACAAGCTGAAGACGCTCTCTCACACGGAATGGAAAAACTGCACCATAATCTATCCTGCAGCATTGCCAATGATCTTCTAGGAAGCTATATTTCTCAGATGGGCGATGGGATGGAGAACTTTGTAAGCCAGCCGAGTGTGTGTTGCTTATTTCTTGAACAGGCAGATCATCTCCGGCAACAAGCTTTGAAGAGAATGTCTCACATCCTACCCGCCAAACAAGCAGCCCAAGGCTTGCTCGCTTTGGGCGAGTACTTTCATCGCCTCCGTGTTCTTAGTTCCCTTTGGGCCACTCGACCTTGCGAACCAACCCAGCCAGCCTAG | 1182 | 44.84 | MAVLSFSPLTFVSLSIFSVHFTLMIGQLSMSSSSTQLYASRMGIYEPFHQINSWGNAFGSRLDTGISPIIKVDDCIENKPEFVPFESMDHVESSQEMNNPVDDKAQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLELELERTKHMGLYTSGLVDTSHLGFGGLVNPGIAAFEREYKHWVEEQQRQVTGLRNALQIHVTDIELQILVESSLKHYHNLFVIKANAAKADVFYIMSGVWRTSAERLFLWIGGFRPSELLKVLKPYFEPLNEQQKANINNLQHSSRQAEDALSHGMEKLHHNLSCSIANDLLGSYISQMGDGMENFVSQPSVCCLFLEQADHLRQQALKRMSHILPAKQAAQGLLALGEYFHRLRVLSSLWATRPCEPTQPA | 393 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4046145 | 4050834 | + | Sed0014212.6 | Sed03g0670 | 706157 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0670 | 393 | SMART | brlzneu | 100 | 163 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0670 | 393 | Pfam | Seed dormancy control | 191 | 265 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed03g0670 | 393 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 107 | 122 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0670 | 393 | Coils | Coil | 272 | 292 | - | - | |
Sed03g0670 | 393 | Gene3D | - | 103 | 151 | - | - | |
Sed03g0670 | 393 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 30 | 389 | - | - | |
Sed03g0670 | 393 | Pfam | bZIP transcription factor | 103 | 133 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0670 | 393 | Coils | Coil | 123 | 150 | - | - | |
Sed03g0670 | 393 | ProSiteProfiles | DOG1 domain profile. | 173 | 385 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed03g0670 | 393 | SUPERFAMILY | Leucine zipper domain | 104 | 137 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0670 | 393 | FunFam | BZIP family transcription factor | 103 | 152 | - | - | |
Sed03g0670 | 393 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 102 | 146 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0668 | Sed-Chr3:4045759 | Sed03g0670 | Sed-Chr3:4046145 | 3.20E-202 | dispersed | |
Sed03g0670 | Sed-Chr3:4046145 | Sed11g2299 | Sed-Chr11:36090263 | 3.30E-152 | dispersed | |
Sed03g0669 | Sed-Chr3:4045759 | Sed03g0670 | Sed-Chr3:4046145 | 1.00E-211 | tandem | |
Sed03g0670 | Sed-Chr3:4046145 | Sed03g0671 | Sed-Chr3:4046145 | 2.30E-185 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37765 | PF14144 | DOG1 | 1.20E-26 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0670 | K14431 | - | csv:101217648 | 595.504 |