Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0670 ATGGCCGTATTGTCTTTTTCACCTCTTACGTTTGTTTCTCTTTCCATCTTTTCAGTTCATTTTACTCTTATGATTGGTCAACTGAGTATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCCTGGGGAAATGCCTTCGGTAGTCGACTCGATACGGGCATATCGCCTATTATAAAAGTAGATGACTGCATAGAAAATAAACCTGAGTTCGTTCCTTTTGAATCGATGGATCATGTTGAGAGCAGTCAAGAAATGAACAATCCAGTTGATGATAAGGCTCAAAGACGTTTAGCACAAAACCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGTTGGAGCTGGAGCTAGAAAGAACCAAGCACATGGGTCTATACACAAGCGGCTTAGTAGATACCAGCCACTTGGGGTTCGGTGGATTGGTAAACCCAGGGATTGCTGCATTTGAGAGGGAATACAAACACTGGGTCGAAGAGCAACAGAGGCAGGTCACTGGACTCAGAAATGCGTTACAAATTCATGTAACCGATATCGAGCTCCAAATTTTAGTTGAGAGCAGCTTGAAGCACTACCACAATCTGTTTGTCATTAAGGCAAACGCTGCAAAGGCTGATGTATTTTATATAATGTCTGGTGTATGGAGAACATCAGCGGAGCGTTTATTCCTCTGGATCGGAGGATTTCGCCCATCAGAGCTACTAAAGGTTCTCAAGCCATACTTTGAGCCATTAAACGAACAACAAAAGGCCAATATCAACAATTTACAACATTCGTCTCGACAAGCTGAAGACGCTCTCTCACACGGAATGGAAAAACTGCACCATAATCTATCCTGCAGCATTGCCAATGATCTTCTAGGAAGCTATATTTCTCAGATGGGCGATGGGATGGAGAACTTTGTAAGCCAGCCGAGTGTGTGTTGCTTATTTCTTGAACAGGCAGATCATCTCCGGCAACAAGCTTTGAAGAGAATGTCTCACATCCTACCCGCCAAACAAGCAGCCCAAGGCTTGCTCGCTTTGGGCGAGTACTTTCATCGCCTCCGTGTTCTTAGTTCCCTTTGGGCCACTCGACCTTGCGAACCAACCCAGCCAGCCTAG 1182 44.84 MAVLSFSPLTFVSLSIFSVHFTLMIGQLSMSSSSTQLYASRMGIYEPFHQINSWGNAFGSRLDTGISPIIKVDDCIENKPEFVPFESMDHVESSQEMNNPVDDKAQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLELELERTKHMGLYTSGLVDTSHLGFGGLVNPGIAAFEREYKHWVEEQQRQVTGLRNALQIHVTDIELQILVESSLKHYHNLFVIKANAAKADVFYIMSGVWRTSAERLFLWIGGFRPSELLKVLKPYFEPLNEQQKANINNLQHSSRQAEDALSHGMEKLHHNLSCSIANDLLGSYISQMGDGMENFVSQPSVCCLFLEQADHLRQQALKRMSHILPAKQAAQGLLALGEYFHRLRVLSSLWATRPCEPTQPA 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4046145 4050834 + Sed0014212.6 Sed03g0670 706157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0670 393 SMART brlzneu 100 163 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0670 393 Pfam Seed dormancy control 191 265 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed03g0670 393 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 107 122 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0670 393 Coils Coil 272 292 - -
Sed03g0670 393 Gene3D - 103 151 - -
Sed03g0670 393 PANTHER TRANSCRIPTION FACTOR TGA9 30 389 - -
Sed03g0670 393 Pfam bZIP transcription factor 103 133 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0670 393 Coils Coil 123 150 - -
Sed03g0670 393 ProSiteProfiles DOG1 domain profile. 173 385 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed03g0670 393 SUPERFAMILY Leucine zipper domain 104 137 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0670 393 FunFam BZIP family transcription factor 103 152 - -
Sed03g0670 393 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 102 146 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0668 Sed-Chr3:4045759 Sed03g0670 Sed-Chr3:4046145 3.20E-202 dispersed
Sed03g0670 Sed-Chr3:4046145 Sed11g2299 Sed-Chr11:36090263 3.30E-152 dispersed
Sed03g0669 Sed-Chr3:4045759 Sed03g0670 Sed-Chr3:4046145 1.00E-211 tandem
Sed03g0670 Sed-Chr3:4046145 Sed03g0671 Sed-Chr3:4046145 2.30E-185 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37765 PF14144 DOG1 1.20E-26 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0670 K14431 - csv:101217648 595.504