Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0671 ATGGCCGTATTGTCTTTTTCACCTCTTACGTTTGTTTCTCTTTCCATCTTTTCAGTTCATTTTACTCTTATGATTGGTCAACTGAGTATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCCTGGGGAAATGCCTTCGGTAGTCGACTCGATACGGGCATATCGCCTATTATAAAAGTAGATGACTGCATAGAAAATAAACCTGAGTTCGTTCCTTTTGAATCGATGGATCATGTTGAGAGCAGTCAAGAAATGAACAATCCAGTTGATGATAAGGCTCAAAGACGTTTAGCACAAAACCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGTTGGAGCTGGAGCTAGAAAGAACCAAGCACATGGGTCTATACACAAGCGGCTTAGTAGATACCAGCCACTTGGGGTTCGGTGGATTGGTAAACCCAGGGATTGCTGCATTTGAGAGGGAATACAAACACTGGGTCGAAGAGCAACAGAGGCAGGTCACTGGACTCAGAAATGCGTTACAAATTCATGTAACCGATATCGAGCTCCAAATTTTAGTTGAGAGCAGCTTGAAGCACTACCACAATCTGTTTGTCATTAAGGCAAACGCTGCAAAGGCTGATGTATTTTATATAATGTCTGGTGTATGGAGAACATCAGCGGAGCGTTTATTCCTCTGGATCGGAGGATTTCGCCCATCAGAGCTACTAAAGGTTCTCAAGCCATACTTTGAGCCATTAAACGAACAACAAAAGGCCAATATCAACAATTTACAACATTCGTCTCGACAAGCTGAAGACGCTCTCTCACACGGAATGGAAAAACTGCACCATAATCTATCCTGCAGCATTGCCAATGATCTTCTAGGAAGCTATATTTCTCAGATGGGCGATGGGATGGAGAACTTTGTAAGCCAGGTAATGTGCTGCATTTTCTTTAACAGTAAATGGAGTTGA 1029 42.86 MAVLSFSPLTFVSLSIFSVHFTLMIGQLSMSSSSTQLYASRMGIYEPFHQINSWGNAFGSRLDTGISPIIKVDDCIENKPEFVPFESMDHVESSQEMNNPVDDKAQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLELELERTKHMGLYTSGLVDTSHLGFGGLVNPGIAAFEREYKHWVEEQQRQVTGLRNALQIHVTDIELQILVESSLKHYHNLFVIKANAAKADVFYIMSGVWRTSAERLFLWIGGFRPSELLKVLKPYFEPLNEQQKANINNLQHSSRQAEDALSHGMEKLHHNLSCSIANDLLGSYISQMGDGMENFVSQVMCCIFFNSKWS 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4046145 4050834 + Sed0014212.7 Sed03g0671 706158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0671 342 SMART brlzneu 100 163 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0671 342 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 107 122 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0671 342 Gene3D - 103 151 - -
Sed03g0671 342 Pfam bZIP transcription factor 103 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0671 342 Pfam Seed dormancy control 191 265 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed03g0671 342 SUPERFAMILY Leucine zipper domain 104 137 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0671 342 Coils Coil 272 292 - -
Sed03g0671 342 PANTHER TRANSCRIPTION FACTOR TGA9 30 327 - -
Sed03g0671 342 ProSiteProfiles DOG1 domain profile. 173 342 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed03g0671 342 Coils Coil 123 150 - -
Sed03g0671 342 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 102 146 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0671 342 FunFam BZIP family transcription factor 103 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0669 Sed-Chr3:4045759 Sed03g0671 Sed-Chr3:4046145 2.20E-174 dispersed
Sed03g0671 Sed-Chr3:4046145 Sed11g2301 Sed-Chr11:36090263 3.80E-136 dispersed
Sed03g0670 Sed-Chr3:4046145 Sed03g0671 Sed-Chr3:4046145 2.30E-185 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37766 PF14144 DOG1 9.50E-27 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0671 K14431 - csv:101217648 502.671