Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0691 ATGGATTCCAATCATAGAAAAATTTACTACTGTTCTGTTTCAATGGTGGAACGTATGCTCTATGTGTATAGTAGTGGGGATGTGGAGATTGAAACTTTGGCTGATTTATGCTTGAAAAGTGCCCCTTCCTTTCACAAGTGGTATTTTGAGACATGGGGTAAAAAGACTTTTGGGTTCTTGATGAAAGAAGGTTATGTTTATTTTGCAATTGCTGATGAAGTTGTAGGTAATCAGGCTCTTTTTCAGTTTCTAGAACAGTTGAGAGATGAATTCAAAAAGGTATCGAAGAAGGGTTCTCGTGGGAGTTTCTCAACTGCAAACTCCAGTAGTGCGCAGGAAAAGTTACTGCCTGCTGTTCGTAATTTAATCACCTCTCTTGAGAATGTATCCCATAGTAGTAAGGATTGGATGGCCGAAACCCCCTCCTCGAACAATGGCCTTTCTCCATCTCCGAGCAATGTGAATGGCCAAGTCGACGTTTTGGCTTCCACAAAAGCCCCTCTATTGGGAAAGTTGAGCAAACCAGAGAAGAAAAAAGGAAAAGACCATGTGATTACAATGAGAGGTATTGAGATGGAGGAGCACCGAAAGTCTACAGATAGAGGTTTGAAGGTTGATTCGGTTTCTTCGGAATCCAGTAATCAAGGTGGAACGGGGTCTTCAATTCCAGTGCAGAAAGACATTAATCCATTGAGGAGATCCAACTCAAGTATCCGAAGGAAGTGGTGGCATCATGTGAGGATCGCCCTTGCTGTCGATGCCGCTGTATGTTTGATATTGTTTGTCATTTGGTTGGTTGTCTGTAATGGAATTTCATGTACCGCTGAGAGTTAA 834 42.09 MDSNHRKIYYCSVSMVERMLYVYSSGDVEIETLADLCLKSAPSFHKWYFETWGKKTFGFLMKEGYVYFAIADEVVGNQALFQFLEQLRDEFKKVSKKGSRGSFSTANSSSAQEKLLPAVRNLITSLENVSHSSKDWMAETPSSNNGLSPSPSNVNGQVDVLASTKAPLLGKLSKPEKKKGKDHVITMRGIEMEEHRKSTDRGLKVDSVSSESSNQGGTGSSIPVQKDINPLRRSNSSIRRKWWHHVRIALAVDAAVCLILFVIWLVVCNGISCTAES 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4141422 4143534 - Sed0027115.1 Sed03g0691 706178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0691 277 MobiDBLite consensus disorder prediction 205 228 - -
Sed03g0691 277 MobiDBLite consensus disorder prediction 171 204 - -
Sed03g0691 277 ProSiteProfiles Longin domain profile. 44 93 IPR010908 -
Sed03g0691 277 Gene3D Longin domain 1 133 - -
Sed03g0691 277 MobiDBLite consensus disorder prediction 133 157 - -
Sed03g0691 277 MobiDBLite consensus disorder prediction 171 228 - -
Sed03g0691 277 Pfam Regulated-SNARE-like domain 46 99 IPR010908 -
Sed03g0691 277 PANTHER PHYTOLONGIN PHYL1.2 1 274 IPR044783 GO:0016020(InterPro)
Sed03g0691 277 SMART Longin_2 33 115 IPR010908 -
Sed03g0691 277 SUPERFAMILY SNARE-like 8 97 IPR011012 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0691 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0691 Sed-Chr3:4141422 Sed03g0568 Sed-Chr3:3500926 4.90E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1753 . . . . . . . . . . . . . . Sed03g0691 . . Bhi04g02540 Tan11g0053 Cmetu03g1265 . Hepe02g3461 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00791 Cam11g0824 Cec11g0806 Cco11g0812 Clacu11g1033 Cmu11g0894 Cre11g1268 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014170 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 0 1 1 1 1 23