Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0698 ATGGATTCAATGGAGGCGATCGAGGAATTGGCTCAGTTGTCGGACTCGATGCGGCAGGCTTCAGCTCTGCTCGCCGACGAGGATGTCGATGAAACTTCCACCTCCGCCGCTTCCTCTCGCCGGCCTTCCACTTTCCTCAACGTCGTGGCCTTGGGGAATGTGGGAGCTGGTAAATCTGCTGTTTTGAACAGCTTAATTGGTCATCCTGTTTTGCCAACTGGTGAAAATGGTGCTACTAGGGCTCCCATAAGCATTGATTTACAAAGGGATGGCTCAGTGAGCAGCAAATCAATTATCTTGCAGATTGACAATAAGTCTCAGCAAGTTTCTGCAAGTGCTTTGCGGCACTCCCTACAGGACAGATTGAGTAAAGGTTCCTCTGGCAAGAGCCGGGATGAAATCTATTTGAAGCTTCGCACTAGTACAGCACCTCCATTGAAATTGATTGATTTACCTGGGCTTGATCAGCGGAGCGTTAGTGAATCAATGATTAGTGAATATGCTGAGCACAATGATGCCATTTTGCTAGTCATCGTTCCTGCCTCTCAAGCAGTTGAGATTGCTTCAAGTCGTGCACTCAGACTGGCAAAGGAATATGACAGTGAAGGGACTAGAACTATTGGGATAATTAGCAAAATAGATCAAGCTGCTTCAGATCAGAAATCGCTGGCTGCTGTTCAAGCTCTACTATTAAATCAAGGACCTTCAAGAGCTTCAGATATGCCATGGATTGCTTTAATTGGTCAATCTGTTTCAATTGCTTCCGCACAGTCTGGATCTGAAAATTCTTTGGAAACTGCTTGGAGGGCAGAGACCGAAAGTCTGAAATCCATACTGGTTGGTGCCCCACCGAGTAAACTGGGTAGAATTGCTTTGGTGGATGCTTTGGCTCATCAAATACAGAACCGTATGAAACTCAGACTTCCCAACCTTTTATCAGGGTTACAAGGGAAGTCTCAGATTGTTCAAGATGAGTTATCGAAGTTCGGTGATCAGATGTCGGATAGTGCTGAAGGGACAAGAGCTGTAGCTTTGCAACTTTGCCGTGAATTTGAGGACACGTTTCTTCAGCACATTGCAACTGGTGAGGGTGCTGGTTGGAAAATTGTTGCTAGTTTTGAGGGAAACTTTCCAAATAGAATCAAGCAGCTCCCTCTAGACAGACATTTTGACATTAACAATGTGAAAAGGATCGTGTTAGAAGCTGATGGCTATCAACCATATTTGATATCCCCTGAAAAGGGTTTGCGATCTCTAATAAAAATTGTTTTAGAGCTTGCAAAAGAACCATCACGTCTCTGTGTTGACGAGGTCCATCGTGTTCTAGTGGATATAGTTTCTGCTGCTGCAAATTCTACACCAGGTCTTGGAAGATACCCGCCTTTCAAGAGAGAGATTGTGGCCATCGCAAGTGCTGCATTAGATGGATTTAAGAATGAAGCGAAGAAAATGGTAGTTGCCCTTGTTGACATGGAGCGAGCTTTTGTGCCTCCACAACATTTTATTCGATTAGTCCAAAGGAGGATGGAGAGGCAGCGTCGAGAGGAGGAGGTGAAATACAAATCATCAAAGAAAGGTCAAGAGGCAGAGCAAGCAATACTAAACAGGGCAACTAGTCCTCAAACTGGTGGAAGCCTGAGATCGATGAAGGAAAAACCAGGCAAAGAGGACAAAGAATTACAAGAAACTTCTAGTTTGAAGACTGCAGGTCCAGAAGGGGAAATAACAGCTGGTTTTCTGTTAAAGAAAAGCGCTAAAACAAATGGATGGAGTAAAAGATGGTTTGTTCTAAATGAAAAGACGGGAAAGCTTGGTTACACTAAGAAGCAAGAGGAGAGGCATTTCCGTGGTGTGATAACTTTGGAGGAATGTAATGTTGAAGAGGCTTCAGACGAGGAAGAAGCTCCTTCAAAGAGTTCAAAGGATAAGAAAGCCAATGGACCAGATTCTGGAAAAGGCCTCGTGTTCAAGATCACAAGCAAAGTTGCATATAAAACTGTTCTTAAAGCGCACAATGCTGTCATCTTGAAGGCCGATACTATGGCTGACAAGGTTGATTGGATGAATAAGATACGGAATGTTATTCAACCATCCAGAGGACAGATGAAGGGTCCTGATAGCGGCCTTTCCATGCGGCAGAGTTTTTCAGATGGTTCTCTTGATATGATGAATAGAAAACCTGTTGATCCCGAAGAAGAACTACGATGGATGTCCCAAGAAGTTCGAGGTTATGTTGAAGCTGTTTTAAACAGTTTAGGCGCCAATGTCCCAAAAGCAGTTGTCCTCTGCCAAGTTGAGAAAGCCAAGGAAGATATGCTAAATCAGTTGTATAGTTCCATCAGTGCTCAAAGTACACAAAGGATAGGGGAGCTACTTCTCGAGGATCACAACGTCAAGAATAAGAGAGAGCGCTACCAAAAACAATCGTCTCTTCTTTCTAAATTGCTACGTCAACTCAGCGTACATGACAACCGAGCTGCTGCTGCAGCCAATTGGTCTGACAGTGGCGCAGAAAGCAGTCCGAGATCGAGTGTTCCATCATCAGGTGAAGACTGGAAATCTGCCTTTGATGCTGCAGCTAATGGTCCTGCAAACTACAGTAAATCTTCATCCAATGGTCACAGTCGACGTTACAGTGATCTAGACCAAAATGGGGATTCGAGCTCACGTTTAAGCTCCAGCAATCGCCGTACTCCAAACCGGGGTCCTCCCCCACCGCCATCTGCTTCTTCGGCTTCAAAATACTTTTAG 2751 44.67 MDSMEAIEELAQLSDSMRQASALLADEDVDETSTSAASSRRPSTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDGSVSSKSIILQIDNKSQQVSASALRHSLQDRLSKGSSGKSRDEIYLKLRTSTAPPLKLIDLPGLDQRSVSESMISEYAEHNDAILLVIVPASQAVEIASSRALRLAKEYDSEGTRTIGIISKIDQAASDQKSLAAVQALLLNQGPSRASDMPWIALIGQSVSIASAQSGSENSLETAWRAETESLKSILVGAPPSKLGRIALVDALAHQIQNRMKLRLPNLLSGLQGKSQIVQDELSKFGDQMSDSAEGTRAVALQLCREFEDTFLQHIATGEGAGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKIVLELAKEPSRLCVDEVHRVLVDIVSAAANSTPGLGRYPPFKREIVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKYKSSKKGQEAEQAILNRATSPQTGGSLRSMKEKPGKEDKELQETSSLKTAGPEGEITAGFLLKKSAKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVITLEECNVEEASDEEEAPSKSSKDKKANGPDSGKGLVFKITSKVAYKTVLKAHNAVILKADTMADKVDWMNKIRNVIQPSRGQMKGPDSGLSMRQSFSDGSLDMMNRKPVDPEEELRWMSQEVRGYVEAVLNSLGANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTQRIGELLLEDHNVKNKRERYQKQSSLLSKLLRQLSVHDNRAAAAANWSDSGAESSPRSSVPSSGEDWKSAFDAAANGPANYSKSSSNGHSRRYSDLDQNGDSSSRLSSSNRRTPNRGPPPPPSASSASKYF 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4182663 4195968 + Sed0002348.1 Sed03g0698 706185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0698 916 FunFam Dynamin-2A 566 700 - -
Sed03g0698 916 FunFam Dynamin-2A 335 542 - -
Sed03g0698 916 Pfam PH domain 577 695 IPR001849 -
Sed03g0698 916 MobiDBLite consensus disorder prediction 515 571 - -
Sed03g0698 916 Gene3D - 560 699 IPR011993 -
Sed03g0698 916 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 71 80 IPR019762 -
Sed03g0698 916 SMART dynamin_3 4 254 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed03g0698 916 ProSiteProfiles PH domain profile. 573 696 IPR001849 -
Sed03g0698 916 Gene3D - 44 324 IPR027417 -
Sed03g0698 916 MobiDBLite consensus disorder prediction 627 650 - -
Sed03g0698 916 MobiDBLite consensus disorder prediction 830 916 - -
Sed03g0698 916 ProSiteProfiles GED domain profile. 734 827 IPR020850 -
Sed03g0698 916 PRINTS Dynamin signature 45 63 IPR022812 -
Sed03g0698 916 PRINTS Dynamin signature 182 200 IPR022812 -
Sed03g0698 916 PRINTS Dynamin signature 201 217 IPR022812 -
Sed03g0698 916 PRINTS Dynamin signature 70 87 IPR022812 -
Sed03g0698 916 MobiDBLite consensus disorder prediction 549 563 - -
Sed03g0698 916 CDD DLP_1 48 309 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed03g0698 916 MobiDBLite consensus disorder prediction 833 850 - -
Sed03g0698 916 MobiDBLite consensus disorder prediction 528 546 - -
Sed03g0698 916 SUPERFAMILY PH domain-like 574 696 - -
Sed03g0698 916 SMART GED_2 729 822 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed03g0698 916 Pfam Dynamin GTPase effector domain 732 816 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed03g0698 916 MobiDBLite consensus disorder prediction 631 648 - -
Sed03g0698 916 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 42 309 IPR030381 GO:0005525(InterPro)
Sed03g0698 916 PANTHER DYNAMIN 13 819 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Sed03g0698 916 Gene3D Dynamin, middle domain 335 537 - -
Sed03g0698 916 MobiDBLite consensus disorder prediction 863 898 - -
Sed03g0698 916 Pfam Dynamin central region 284 500 IPR000375 -
Sed03g0698 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 318 IPR027417 -
Sed03g0698 916 FunFam Dynamin-2A 692 802 - -
Sed03g0698 916 SMART PH_update 574 698 IPR001849 -
Sed03g0698 916 Pfam Dynamin family 48 212 IPR045063 -
Sed03g0698 916 FunFam Dynamin-2B isoform A 44 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0698 K01528 - - csv:101220030 1551.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0698 Sed-Chr3:4182663 Sed11g1773 Sed-Chr11:32702616 0.00E+00 dispersed
Sed03g0698 Sed-Chr3:4182663 Sed10g1643 Sed-Chr10:32993177 0.00E+00 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69