Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0699 ATGAATAGAGGAATGGATTTAGGGATTGAAGCAATGAGGAACCAAAACCATGAGAAGTATTTAGATTCACAGCTATGGCATGCTTGTGCTGGTGGGATGGTTCAGATACCTTCCATTAACTCAAAGGTAGTCTACTTCCCCCAGGGCCATGCCGAGCATGCCCTGGGGCACGTCGATTTCGGGAATGCTCGGATTCCTCCCTTCATTCCTGGTAGGGTGTCTGACATCAAATATATGGCAGATCCCGAAACGGATGAGATTTTTGTTAAGATAAGGTTGATTCCTCTGAGGAACAATGAATTCAATTTGGATGATGACAAGGAGCTTCCTGGCCACAATGGAATTAGAAACCAGGAGAAACAATCCTCATTTGCCAAGACATTGACACAATCTGATGCAAACAATGGTGGGGGATTCTCTGTGCCTCGGTATTGTGCGGAGACGATCTTTCCTCGATTGGATTACTCGGCAGAGCCTCCTGTCCAGACCATTCTTGCCAAGGATGTTCATGGTGAGGTTTGGAGGTTTAGGCACATATACAGAGGAACTCCGCGTCGCCATCTTTTGACAACTGGGTGGAGTAATTTTGTGAATCAAAAGAAACTTGTTGCTGGGGACTCGATTGTTTTCCTGAGGACGGAAACCGGTGACCTTTGTGTCGGAGTTCGGCGAGCCAAGAGGGGAATTGGTTGCGGAATTGATTACTCACCGGCGTGGAACACAGCAAATTCAGGCTCTTCACTTGTGGGGTATTCTGATTTCATGAGGGAGAATGGTGGTAGATCTGTAAGAGGTAATTCAAATGGGAATCCGAGCGGAAGAGTGAAGGTCGAGTCTGTCATCGAAGCCGCAATGCTTGCTGCCAGTGGCAAACCCTTTGAGATTGTGTACTACCCATGTGCTGGTACTCCAGAGTTTGTTGTTAGGGCATCTACTGTGAAATCTGCAATGCAAATTCAATGGTATTCTTCAATGAGATTCAAGATGCCGTTCGAAACTGAAGATTCATCTCGGATAAGCTGGTTTATGGGAACTATATCTTCTGTCCAGATAGCGGATCCTATTCGGTGGCCAGATTCTCCATGGCGAATATTGCAGGTGACATGGGATGAGCCAGATTTACTGCAAAATGTGAAGAGTGTCAACCCATGGTTGGTTGAAGTGGTAGCGAACATGCCAGCTATCCATGTCTCCCCCTTCTCGCCGCCACCGAGAAAGAAGCCCCGTTTTCCGCTTCCATCTGAAGCTTCTGTATTCCCTCACCTTCCAATGCCATCGTTTTCCCCCAATTTCTTTGATGCAACCAACCCGTTATCAAGCATTAGAGCTAACAACATTCCTGCAAGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCATCTAACCTCCAAATCAGCAAACCGCCTCCGGTAAAATTTCCCGCTGGTCTTGCGCACAAGGATGGTGCCACTCCTCTTCCTGGCATCCGCAGTGGGGATATTCTCGGAGGCATGAAAAACGCTGATAATCTTTCGCATTGGCTAACGGTGGGAAATCACATCCAAAGTTCAAAAGAATGCAAAGAAACAAAACCAGCTCATATCATATTGTTCGGCCAGGTCATTTACCCAAATCAACAGATTTCTAACAACTCCTCTGGAAATACTACGAATGCCTCCGATGCGAATTTAGAGAAAGCGTCAAATCTTTCTGACGGATCCGGTTTGTCGTCACAGCAGAATGGTTCACTGGAGAATTCATCAGATGGAGCATCTACCTCGTACAGGTCTAGACCAAACTGGTCTTAG 1794 46.66 MNRGMDLGIEAMRNQNHEKYLDSQLWHACAGGMVQIPSINSKVVYFPQGHAEHALGHVDFGNARIPPFIPGRVSDIKYMADPETDEIFVKIRLIPLRNNEFNLDDDKELPGHNGIRNQEKQSSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTILAKDVHGEVWRFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRTETGDLCVGVRRAKRGIGCGIDYSPAWNTANSGSSLVGYSDFMRENGGRSVRGNSNGNPSGRVKVESVIEAAMLAASGKPFEIVYYPCAGTPEFVVRASTVKSAMQIQWYSSMRFKMPFETEDSSRISWFMGTISSVQIADPIRWPDSPWRILQVTWDEPDLLQNVKSVNPWLVEVVANMPAIHVSPFSPPPRKKPRFPLPSEASVFPHLPMPSFSPNFFDATNPLSSIRANNIPASIQGARHTQFGLSSSNLQISKPPPVKFPAGLAHKDGATPLPGIRSGDILGGMKNADNLSHWLTVGNHIQSSKECKETKPAHIILFGQVIYPNQQISNNSSGNTTNASDANLEKASNLSDGSGLSSQQNGSLENSSDGASTSYRSRPNWS 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4199364 4202757 - Sed0024963.1 Sed03g0699 706186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0699 597 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677(InterPro)
Sed03g0699 597 FunFam Auxin response factor 122 226 - -
Sed03g0699 597 SMART B3_2 124 226 IPR003340 GO:0003677(InterPro)
Sed03g0699 597 Gene3D - 321 393 - -
Sed03g0699 597 FunFam Auxin response factor 321 394 - -
Sed03g0699 597 MobiDBLite consensus disorder prediction 105 131 - -
Sed03g0699 597 Pfam B3 DNA binding domain 124 225 IPR003340 GO:0003677(InterPro)
Sed03g0699 597 SUPERFAMILY DNA-binding pseudobarrel domain 113 226 IPR015300 -
Sed03g0699 597 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 567 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed03g0699 597 Pfam Auxin response factor 283 366 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed03g0699 597 CDD B3_DNA 123 224 IPR003340 GO:0003677(InterPro)
Sed03g0699 597 MobiDBLite consensus disorder prediction 544 597 - -
Sed03g0699 597 Gene3D - 122 226 IPR015300 -
Sed03g0699 597 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0699 Sed-Chr3:4199364 Sed14g0406 Sed-Chr14:4240115 2.50E-175 dispersed
Sed03g0699 Sed-Chr3:4199364 Sed01g2849 Sed-Chr1:23945631 1.40E-282 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37768 PF02362 B3 1.20E-21 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0699 K14486 - csv:101204568 912.909