Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g0738 | ATGGAGGAAACTTTCAGCCTTGTCCCAGAATCAACTCCCACAAATTCAATGGAACCAGAGCCTCAAGAAGATGATAGAGACCCTGAAAGCAATCCCTTAAACCAGCCTCTTCTCAAGAGAAACAGAACTCTTTCTTCAAGTCCTTTAGCCATTGTTGGAGCTAAAGTTTCTCTCATTGAAAGCTTGGATTATGAGATTAATGAGAATGATCTGTTTAAACATGATTGGAGAAGCAGATCCAAAGTTCAAGTTTTGCAGTATATATGTTCTAAATGGACATTGGCTTGTCTTGTTGGACTTCTTACTGGAATCATTGCCACTCTTATTAATCTTGCTATTGAAAACATTGCTGGTTATAAGCTTTTGACAGTGGTTGCTTACATAAAAGAAGGAAGGTACTTAATGGGGTTTGCCTACTTTACCACTGCAAATTTCCTTTTGACTTTTGTTGCTGCTGTTCTCTGTGTATGCTTTGCTCCCACTGCAGCTGGGCCTGGTATACCAGAAATCAAAGCCTATCTCAATGGCATCGATACTCCGGACATGTTCGGTGCCACGACGCTGATCGTTAAGATAATTGGGAGCATTGGAGCAGTGTCTGCAGGGCTAGATCTTGGAAAAGAAGGGCCTCTAGTACACATTGGCAGCTGCATTGCCTCCTTACTCGGGCAGGGCGGGCCGGACAACTATCGAGTTAAATGGACGTGGCTACGCTATTTCAACAACGATAGAGACCGTCGGGATCTCATCACTTGTGGGGCGTCGTCCGGGGTTTGTGCAGCATTCCGAGCTCCGGTAGGGGGTGTCCTATTTGCTCTAGAAGAGGTAGCTACTTGGTGGAGAAGTGCCTTGCTTTGGAGGACCTTTTTTAGCACAGCCATTGTTGTGGTGGTGCTAAGAACTTTCATTGAAATATGCAAGGCAGGTGAATGTGGGCTGTTTGGAGAAGGAGGGCTTATAATGTTTGATGTCAGTGGTGTTTCTGTTACTTACCATATTATGGACATTATACCAGTTGCTATCATTGGTCTCCTTGGTGGGTTCCTTGGAAGCCTTTATAACTATCTTTTGCACAAAGTTCTCAGAGTTTACAACCTCATCAATCAGAAGGGGAAAATGCACAAATTATTACTAGCATTGGGAGTTTCACTGTTCACGTCAATTTGCCAGTACAGTCTCCCGTACCTGGTGAAATGCACGCCCTGTAACCCTAATCTTCCAGATTCAGCTTGCCCCACCAATGGCCGCTCCGGCAACTTCAAGCAGTTCAACTGCCCGAAAGGCCATTACAACGACCTCGCCACGCTCCTCCTCACCACCAACGACGACGCCGTCCGGAACATCTTCTCCGTCAACACCCCCGACGAGTACCAGCCGCTCTCTCTCGTCATCTTCTTCCTCCTCTACTGCATCCTCGCCCTGTTCACCTTCGGCATCGCCGTCCCCTCCGGCCTCTTCCTTCCCATCATCTTGATGGGTTCCGGCTACGGCCGTCTCATCGGACTTCTCATGCGGCCCTACACCAATCTCGATCAGGGCCTCTTGGCTGTTCTCGGCGCCGCTTCCTTGATGTCCGGATCGATGAGGATGACGGTTTCGCTCTGTGTTATCTTCCTCGAGCTTACTAATAATCTGCTCTTGCTTCCGATTACCATGATTGTTCTTCTCATTGCGAAGACGGTTGGGGATAGTTTCAACCCTAGTATTTACGATATCATTCTGCATTTGAAGGGGCTCCCGTTTCTGGATGCGAATCCGGAGCCGTGGATGAGGAATATTACGGTCGGCGATCTGGCGGACGCGAAGCCGGCGGTGGTGACGCTGCGGGGGTTGGAGAAGGTGGCGCGGATTGTGGAGGTTCTTAAGAACACCACGCACAATGGGTTCCCTGTGGTGGATGCAGATTCGGTGGTGCCGCGGGTCGGGATGGCGGTGGGCGCGACGGAGCTGCACGGGCTGGTGCTGAGGGCGCATTTGTTGCAGGTGTTGAAGAAGAGGTGGTTTCTGAGAGAGCGGCGGAGGACGGAGGAGTGGGAGGTGAGGGAGAAGTTTACGTGGGTTGAATTGGCGGAGAGGGAAGGGAAGATTGAAGAGCTTGTTGTGACCAAGGAGGAGATGGAGATGTTCGTTGATCTTCACCCTCTTACCAACACCACGCCTTACACTGTGATTGAAAGCATGTCGGTTGCTAAAGCTCTGGTTCTGTTCAGGCAAGTGGGTCTTCGCCATTTGCTCATTGTGCCTAAATATGAAGCAGCTGGGGTTCCGCCTGTAATTGGGATATTGACGAGGCAGGATTTAAGGCCATACAACATTCTGAGTGCATTTCCTCATCTGGCCAGAATCAAAGGCCACGAGAAAGGGAACTGA | 2370 | 49.49 | MEETFSLVPESTPTNSMEPEPQEDDRDPESNPLNQPLLKRNRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRSKVQVLQYICSKWTLACLVGLLTGIIATLINLAIENIAGYKLLTVVAYIKEGRYLMGFAYFTTANFLLTFVAAVLCVCFAPTAAGPGIPEIKAYLNGIDTPDMFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWTWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAIVVVVLRTFIEICKAGECGLFGEGGLIMFDVSGVSVTYHIMDIIPVAIIGLLGGFLGSLYNYLLHKVLRVYNLINQKGKMHKLLLALGVSLFTSICQYSLPYLVKCTPCNPNLPDSACPTNGRSGNFKQFNCPKGHYNDLATLLLTTNDDAVRNIFSVNTPDEYQPLSLVIFFLLYCILALFTFGIAVPSGLFLPIILMGSGYGRLIGLLMRPYTNLDQGLLAVLGAASLMSGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLDANPEPWMRNITVGDLADAKPAVVTLRGLEKVARIVEVLKNTTHNGFPVVDADSVVPRVGMAVGATELHGLVLRAHLLQVLKKRWFLRERRRTEEWEVREKFTWVELAEREGKIEELVVTKEEMEMFVDLHPLTNTTPYTVIESMSVAKALVLFRQVGLRHLLIVPKYEAAGVPPVIGILTRQDLRPYNILSAFPHLARIKGHEKGN | 789 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4437821 | 4442823 | - | Sed0024033.1 | Sed03g0738 | 706225 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g0738 | 789 | FunFam | Chloride channel ClC3 | 83 | 400 | - | - | |
| Sed03g0738 | 789 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 602 | 770 | - | - | |
| Sed03g0738 | 789 | Gene3D | - | 602 | 769 | IPR046342 | - | |
| Sed03g0738 | 789 | SMART | cbs_1 | 604 | 664 | IPR000644 | - | |
| Sed03g0738 | 789 | SMART | cbs_1 | 719 | 772 | IPR000644 | - | |
| Sed03g0738 | 789 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Sed03g0738 | 789 | PRINTS | Plant CLC chloride channel signature | 290 | 300 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed03g0738 | 789 | PRINTS | Plant CLC chloride channel signature | 65 | 73 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed03g0738 | 789 | PRINTS | Plant CLC chloride channel signature | 308 | 315 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed03g0738 | 789 | PRINTS | Plant CLC chloride channel signature | 433 | 449 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed03g0738 | 789 | PRINTS | Plant CLC chloride channel signature | 276 | 284 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed03g0738 | 789 | SUPERFAMILY | Clc chloride channel | 69 | 584 | IPR014743 | - | |
| Sed03g0738 | 789 | SUPERFAMILY | CBS-domain pair | 586 | 768 | IPR046342 | - | |
| Sed03g0738 | 789 | ProSiteProfiles | CBS domain profile. | 716 | 781 | IPR000644 | - | |
| Sed03g0738 | 789 | Pfam | CBS domain | 717 | 768 | IPR000644 | - | |
| Sed03g0738 | 789 | Gene3D | Clc chloride channel | 82 | 584 | - | - | |
| Sed03g0738 | 789 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 40 | 769 | IPR051280 | GO:0009671(PANTHER)|GO:0009705(PANTHER)|GO:0043231(PANTHER) | |
| Sed03g0738 | 789 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Sed03g0738 | 789 | CDD | ClC_6_like | 60 | 582 | - | - | |
| Sed03g0738 | 789 | Pfam | Voltage gated chloride channel | 148 | 562 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0738 | 789 | PRINTS | Chloride channel signature | 160 | 177 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0738 | 789 | PRINTS | Chloride channel signature | 191 | 210 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0738 | 789 | PRINTS | Chloride channel signature | 255 | 274 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0738 | 789 | PRINTS | Chloride channel signature | 513 | 529 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0738 | 789 | PRINTS | Chloride channel signature | 481 | 501 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0738 | 789 | PRINTS | Chloride channel signature | 569 | 583 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0738 | 789 | PRINTS | Chloride channel signature | 531 | 550 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g0738 | Sed-Chr3:4437821 | Sed13g1106 | Sed-Chr13:10076534 | 1.90E-231 | dispersed | |
| Sed03g0738 | Sed-Chr3:4437821 | Sed03g0739 | Sed-Chr3:4437821 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g0738 | K05016 | - | csv:101210008 | 1425.99 |