Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g0739 | ATGGGGTTTGCCTACTTTACCACTGCAAATTTCCTTTTGACTTTTGTTGCTGCTGTTCTCTGTGTATGCTTTGCTCCCACTGCAGCTGGGCCTGGTATACCAGAAATCAAAGCCTATCTCAATGGCATCGATACTCCGGACATGTTCGGTGCCACGACGCTGATCGTTAAGATAATTGGGAGCATTGGAGCAGTGTCTGCAGGGCTAGATCTTGGAAAAGAAGGGCCTCTAGTACACATTGGCAGCTGCATTGCCTCCTTACTCGGGCAGGGCGGGCCGGACAACTATCGAGTTAAATGGACGTGGCTACGCTATTTCAACAACGATAGAGACCGTCGGGATCTCATCACTTGTGGGGCGTCGTCCGGGGTTTGTGCAGCATTCCGAGCTCCGGTAGGGGGTGTCCTATTTGCTCTAGAAGAGGTAGCTACTTGGTGGAGAAGTGCCTTGCTTTGGAGGACCTTTTTTAGCACAGCCATTGTTGTGGTGGTGCTAAGAACTTTCATTGAAATATGCAAGGCAGGTGAATGTGGGCTGTTTGGAGAAGGAGGGCTTATAATGTTTGATGTCAGTGGTGTTTCTGTTACTTACCATATTATGGACATTATACCAGTTGCTATCATTGGTCTCCTTGGTGGGTTCCTTGGAAGCCTTTATAACTATCTTTTGCACAAAGTTCTCAGAGTTTACAACCTCATCAATCAGAAGGGGAAAATGCACAAATTATTACTAGCATTGGGAGTTTCACTGTTCACGTCAATTTGCCAGTACAGTCTCCCGTACCTGGTGAAATGCACGCCCTGTAACCCTAATCTTCCAGATTCAGCTTGCCCCACCAATGGCCGCTCCGGCAACTTCAAGCAGTTCAACTGCCCGAAAGGCCATTACAACGACCTCGCCACGCTCCTCCTCACCACCAACGACGACGCCGTCCGGAACATCTTCTCCGTCAACACCCCCGACGAGTACCAGCCGCTCTCTCTCGTCATCTTCTTCCTCCTCTACTGCATCCTCGCCCTGTTCACCTTCGGCATCGCCGTCCCCTCCGGCCTCTTCCTTCCCATCATCTTGATGGGTTCCGGCTACGGCCGTCTCATCGGACTTCTCATGCGGCCCTACACCAATCTCGATCAGGGCCTCTTGGCTGTTCTCGGCGCCGCTTCCTTGATGTCCGGATCGATGAGGATGACGGTTTCGCTCTGTGTTATCTTCCTCGAGCTTACTAATAATCTGCTCTTGCTTCCGATTACCATGATTGTTCTTCTCATTGCGAAGACGGTTGGGGATAGTTTCAACCCTAGTATTTACGATATCATTCTGCATTTGAAGGGGCTCCCGTTTCTGGATGCGAATCCGGAGCCGTGGATGAGGAATATTACGGTCGGCGATCTGGCGGACGCGAAGCCGGCGGTGGTGACGCTGCGGGGGTTGGAGAAGGTGGCGCGGATTGTGGAGGTTCTTAAGAACACCACGCACAATGGGTTCCCTGTGGTGGATGCAGATTCGGTGGTGCCGCGGGTCGGGATGGCGGTGGGCGCGACGGAGCTGCACGGGCTGGTGCTGAGGGCGCATTTGTTGCAGGTGTTGAAGAAGAGGTGGTTTCTGAGAGAGCGGCGGAGGACGGAGGAGTGGGAGGTGAGGGAGAAGTTTACGTGGGTTGAATTGGCGGAGAGGGAAGGGAAGATTGAAGAGCTTGTTGTGACCAAGGAGGAGATGGAGATGTTCGTTGATCTTCACCCTCTTACCAACACCACGCCTTACACTGTGATTGAAAGCATGTCGGTTGCTAAAGCTCTGGTTCTGTTCAGGCAAGTGGGTCTTCGCCATTTGCTCATTGTGCCTAAATATGAAGCAGCTGGGGTTCCGCCTGTAATTGGGATATTGACGAGGCAGGATTTAAGGCCATACAACATTCTGAGTGCATTTCCTCATCTGGCCAGAATCAAAGGCCACGAGAAAGGGAACTGA | 1968 | 51.88 | MGFAYFTTANFLLTFVAAVLCVCFAPTAAGPGIPEIKAYLNGIDTPDMFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWTWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAIVVVVLRTFIEICKAGECGLFGEGGLIMFDVSGVSVTYHIMDIIPVAIIGLLGGFLGSLYNYLLHKVLRVYNLINQKGKMHKLLLALGVSLFTSICQYSLPYLVKCTPCNPNLPDSACPTNGRSGNFKQFNCPKGHYNDLATLLLTTNDDAVRNIFSVNTPDEYQPLSLVIFFLLYCILALFTFGIAVPSGLFLPIILMGSGYGRLIGLLMRPYTNLDQGLLAVLGAASLMSGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLDANPEPWMRNITVGDLADAKPAVVTLRGLEKVARIVEVLKNTTHNGFPVVDADSVVPRVGMAVGATELHGLVLRAHLLQVLKKRWFLRERRRTEEWEVREKFTWVELAEREGKIEELVVTKEEMEMFVDLHPLTNTTPYTVIESMSVAKALVLFRQVGLRHLLIVPKYEAAGVPPVIGILTRQDLRPYNILSAFPHLARIKGHEKGN | 655 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4437821 | 4442823 | - | Sed0024033.2 | Sed03g0739 | 706226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g0739 | 655 | PRINTS | Chloride channel signature | 57 | 76 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0739 | 655 | PRINTS | Chloride channel signature | 26 | 43 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0739 | 655 | PRINTS | Chloride channel signature | 435 | 449 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0739 | 655 | PRINTS | Chloride channel signature | 397 | 416 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0739 | 655 | PRINTS | Chloride channel signature | 379 | 395 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0739 | 655 | PRINTS | Chloride channel signature | 121 | 140 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0739 | 655 | PRINTS | Chloride channel signature | 347 | 367 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0739 | 655 | Pfam | CBS domain | 583 | 634 | IPR000644 | - | |
| Sed03g0739 | 655 | SUPERFAMILY | Clc chloride channel | 4 | 450 | IPR014743 | - | |
| Sed03g0739 | 655 | ProSiteProfiles | CBS domain profile. | 582 | 647 | IPR000644 | - | |
| Sed03g0739 | 655 | PRINTS | Plant CLC chloride channel signature | 156 | 166 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed03g0739 | 655 | PRINTS | Plant CLC chloride channel signature | 174 | 181 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed03g0739 | 655 | PRINTS | Plant CLC chloride channel signature | 299 | 315 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed03g0739 | 655 | PRINTS | Plant CLC chloride channel signature | 142 | 150 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Sed03g0739 | 655 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 2 | 635 | IPR051280 | GO:0009671(PANTHER)|GO:0009705(PANTHER)|GO:0043231(PANTHER) | |
| Sed03g0739 | 655 | Gene3D | - | 466 | 636 | IPR046342 | - | |
| Sed03g0739 | 655 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 468 | 636 | - | - | |
| Sed03g0739 | 655 | SMART | cbs_1 | 470 | 530 | IPR000644 | - | |
| Sed03g0739 | 655 | SMART | cbs_1 | 585 | 638 | IPR000644 | - | |
| Sed03g0739 | 655 | Gene3D | Clc chloride channel | 1 | 450 | - | - | |
| Sed03g0739 | 655 | Pfam | Voltage gated chloride channel | 14 | 428 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0739 | 655 | SUPERFAMILY | CBS-domain pair | 452 | 634 | IPR046342 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g0739 | Sed-Chr3:4437821 | Sed13g1106 | Sed-Chr13:10076534 | 9.90E-202 | dispersed | |
| Sed03g0738 | Sed-Chr3:4437821 | Sed03g0739 | Sed-Chr3:4437821 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g0739 | K05016 | - | csv:101210008 | 1201.42 |