Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0739 ATGGGGTTTGCCTACTTTACCACTGCAAATTTCCTTTTGACTTTTGTTGCTGCTGTTCTCTGTGTATGCTTTGCTCCCACTGCAGCTGGGCCTGGTATACCAGAAATCAAAGCCTATCTCAATGGCATCGATACTCCGGACATGTTCGGTGCCACGACGCTGATCGTTAAGATAATTGGGAGCATTGGAGCAGTGTCTGCAGGGCTAGATCTTGGAAAAGAAGGGCCTCTAGTACACATTGGCAGCTGCATTGCCTCCTTACTCGGGCAGGGCGGGCCGGACAACTATCGAGTTAAATGGACGTGGCTACGCTATTTCAACAACGATAGAGACCGTCGGGATCTCATCACTTGTGGGGCGTCGTCCGGGGTTTGTGCAGCATTCCGAGCTCCGGTAGGGGGTGTCCTATTTGCTCTAGAAGAGGTAGCTACTTGGTGGAGAAGTGCCTTGCTTTGGAGGACCTTTTTTAGCACAGCCATTGTTGTGGTGGTGCTAAGAACTTTCATTGAAATATGCAAGGCAGGTGAATGTGGGCTGTTTGGAGAAGGAGGGCTTATAATGTTTGATGTCAGTGGTGTTTCTGTTACTTACCATATTATGGACATTATACCAGTTGCTATCATTGGTCTCCTTGGTGGGTTCCTTGGAAGCCTTTATAACTATCTTTTGCACAAAGTTCTCAGAGTTTACAACCTCATCAATCAGAAGGGGAAAATGCACAAATTATTACTAGCATTGGGAGTTTCACTGTTCACGTCAATTTGCCAGTACAGTCTCCCGTACCTGGTGAAATGCACGCCCTGTAACCCTAATCTTCCAGATTCAGCTTGCCCCACCAATGGCCGCTCCGGCAACTTCAAGCAGTTCAACTGCCCGAAAGGCCATTACAACGACCTCGCCACGCTCCTCCTCACCACCAACGACGACGCCGTCCGGAACATCTTCTCCGTCAACACCCCCGACGAGTACCAGCCGCTCTCTCTCGTCATCTTCTTCCTCCTCTACTGCATCCTCGCCCTGTTCACCTTCGGCATCGCCGTCCCCTCCGGCCTCTTCCTTCCCATCATCTTGATGGGTTCCGGCTACGGCCGTCTCATCGGACTTCTCATGCGGCCCTACACCAATCTCGATCAGGGCCTCTTGGCTGTTCTCGGCGCCGCTTCCTTGATGTCCGGATCGATGAGGATGACGGTTTCGCTCTGTGTTATCTTCCTCGAGCTTACTAATAATCTGCTCTTGCTTCCGATTACCATGATTGTTCTTCTCATTGCGAAGACGGTTGGGGATAGTTTCAACCCTAGTATTTACGATATCATTCTGCATTTGAAGGGGCTCCCGTTTCTGGATGCGAATCCGGAGCCGTGGATGAGGAATATTACGGTCGGCGATCTGGCGGACGCGAAGCCGGCGGTGGTGACGCTGCGGGGGTTGGAGAAGGTGGCGCGGATTGTGGAGGTTCTTAAGAACACCACGCACAATGGGTTCCCTGTGGTGGATGCAGATTCGGTGGTGCCGCGGGTCGGGATGGCGGTGGGCGCGACGGAGCTGCACGGGCTGGTGCTGAGGGCGCATTTGTTGCAGGTGTTGAAGAAGAGGTGGTTTCTGAGAGAGCGGCGGAGGACGGAGGAGTGGGAGGTGAGGGAGAAGTTTACGTGGGTTGAATTGGCGGAGAGGGAAGGGAAGATTGAAGAGCTTGTTGTGACCAAGGAGGAGATGGAGATGTTCGTTGATCTTCACCCTCTTACCAACACCACGCCTTACACTGTGATTGAAAGCATGTCGGTTGCTAAAGCTCTGGTTCTGTTCAGGCAAGTGGGTCTTCGCCATTTGCTCATTGTGCCTAAATATGAAGCAGCTGGGGTTCCGCCTGTAATTGGGATATTGACGAGGCAGGATTTAAGGCCATACAACATTCTGAGTGCATTTCCTCATCTGGCCAGAATCAAAGGCCACGAGAAAGGGAACTGA 1968 51.88 MGFAYFTTANFLLTFVAAVLCVCFAPTAAGPGIPEIKAYLNGIDTPDMFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWTWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAIVVVVLRTFIEICKAGECGLFGEGGLIMFDVSGVSVTYHIMDIIPVAIIGLLGGFLGSLYNYLLHKVLRVYNLINQKGKMHKLLLALGVSLFTSICQYSLPYLVKCTPCNPNLPDSACPTNGRSGNFKQFNCPKGHYNDLATLLLTTNDDAVRNIFSVNTPDEYQPLSLVIFFLLYCILALFTFGIAVPSGLFLPIILMGSGYGRLIGLLMRPYTNLDQGLLAVLGAASLMSGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLDANPEPWMRNITVGDLADAKPAVVTLRGLEKVARIVEVLKNTTHNGFPVVDADSVVPRVGMAVGATELHGLVLRAHLLQVLKKRWFLRERRRTEEWEVREKFTWVELAEREGKIEELVVTKEEMEMFVDLHPLTNTTPYTVIESMSVAKALVLFRQVGLRHLLIVPKYEAAGVPPVIGILTRQDLRPYNILSAFPHLARIKGHEKGN 655
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 4437821 4442823 - Sed0024033.2 Sed03g0739 706226
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0739 655 PRINTS Chloride channel signature 57 76 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g0739 655 PRINTS Chloride channel signature 26 43 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g0739 655 PRINTS Chloride channel signature 435 449 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g0739 655 PRINTS Chloride channel signature 397 416 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g0739 655 PRINTS Chloride channel signature 379 395 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g0739 655 PRINTS Chloride channel signature 121 140 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g0739 655 PRINTS Chloride channel signature 347 367 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g0739 655 Pfam CBS domain 583 634 IPR000644 -
Sed03g0739 655 SUPERFAMILY Clc chloride channel 4 450 IPR014743 -
Sed03g0739 655 ProSiteProfiles CBS domain profile. 582 647 IPR000644 -
Sed03g0739 655 PRINTS Plant CLC chloride channel signature 156 166 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Sed03g0739 655 PRINTS Plant CLC chloride channel signature 174 181 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Sed03g0739 655 PRINTS Plant CLC chloride channel signature 299 315 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Sed03g0739 655 PRINTS Plant CLC chloride channel signature 142 150 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Sed03g0739 655 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 2 635 IPR051280 GO:0009671(PANTHER)|GO:0009705(PANTHER)|GO:0043231(PANTHER)
Sed03g0739 655 Gene3D - 466 636 IPR046342 -
Sed03g0739 655 CDD CBS_pair_voltage-gated_CLC_euk_bac 468 636 - -
Sed03g0739 655 SMART cbs_1 470 530 IPR000644 -
Sed03g0739 655 SMART cbs_1 585 638 IPR000644 -
Sed03g0739 655 Gene3D Clc chloride channel 1 450 - -
Sed03g0739 655 Pfam Voltage gated chloride channel 14 428 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g0739 655 SUPERFAMILY CBS-domain pair 452 634 IPR046342 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0739 Sed-Chr3:4437821 Sed13g1106 Sed-Chr13:10076534 9.90E-202 dispersed
Sed03g0738 Sed-Chr3:4437821 Sed03g0739 Sed-Chr3:4437821 0.00E+00 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0739 K05016 - csv:101210008 1201.42