Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0750 | ATGAGTTTTGTTTTCCGTGGAACAAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCAGAGCGGCGTGCAATGCGAGTTCATCCAACACGTTCTGTTAATTCAAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGCTATTTATGATATTAAACTCTCACCAGATGTCACCAAATTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTATGCAACTTGTCAACAACTTCAAGCCCAAGCCCAAGCTAGAGCTATGGCAGCTAGTGGGCTTCTTGGCCACACTGAATTGAGGTTACAGATGCCACCATCAATAGCACTTGCAACAAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATAGGGAATTCGATGATTTAGACTATGAAACTTTGAGAGCATTGGATTCCGACAATGTTCCAACAACACCTTCAATGAGTGAGGAACAAATAAATGCTCTTCCAGTGCATAAATACAAGGTTTCTGGTCCTCAAAGTGACCCTGCTGTGAACCAGCAGGCTTCATCTTCAGAATCTAATGAGAAGAGACAAGATTTAGTTAAAGCAGTAGGCGGTACCAAGTCCTTAGAGGATGAACTTACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCGTACGTAGTTTGCCATGTTTGCATCAGTTCCATGACAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTATGTAAATTCAGAGCAGTGCCCGGGTGGTCGGAACAGGGGCAAGAGGAAACGGATGCTTATATGGTCTAA | 828 | 43.96 | MSFVFRGTRVPDIENGLSGFIPERRAMRVHPTRSVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLQMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDPAVNQQASSSESNEKRQDLVKAVGGTKSLEDELTCSVCLEQVNVGELVRSLPCLHQFHDNCIDPWLRQQGTCPVCKFRAVPGWSEQGQEETDAYMV | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4508525 | 4512977 | - | Sed0018949.1 | Sed03g0750 | 706237 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0750 | 275 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 260 | IPR013083 | - | |
Sed03g0750 | 275 | SMART | ring_2 | 214 | 254 | IPR001841 | - | |
Sed03g0750 | 275 | SUPERFAMILY | RING/U-box | 206 | 261 | - | - | |
Sed03g0750 | 275 | CDD | RING-H2_PA-TM-RING | 213 | 255 | - | - | |
Sed03g0750 | 275 | PANTHER | TARGET OF ERK KINASE MPK-1 | 2 | 259 | - | GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
Sed03g0750 | 275 | ProSiteProfiles | Zinc finger RING-type profile. | 214 | 255 | IPR001841 | - | |
Sed03g0750 | 275 | Pfam | Ring finger domain | 213 | 255 | IPR001841 | - | |
Sed03g0750 | 275 | MobiDBLite | consensus disorder prediction | 177 | 192 | - | - | |
Sed03g0750 | 275 | MobiDBLite | consensus disorder prediction | 174 | 197 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0750 | Sed-Chr3:4508525 | Sed11g2218 | Sed-Chr11:35743773 | 1.10E-117 | dispersed | |
Sed07g0060 | Sed-Chr7:757386 | Sed03g0750 | Sed-Chr3:4508525 | 3.00E-09 | transposed | |
Sed11g2217 | Sed-Chr11:35743773 | Sed03g0750 | Sed-Chr3:4508525 | 1.20E-140 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0750 | K16283 | - | csv:101216306 | 473.781 |