Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0750 ATGAGTTTTGTTTTCCGTGGAACAAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCAGAGCGGCGTGCAATGCGAGTTCATCCAACACGTTCTGTTAATTCAAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGCTATTTATGATATTAAACTCTCACCAGATGTCACCAAATTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTATGCAACTTGTCAACAACTTCAAGCCCAAGCCCAAGCTAGAGCTATGGCAGCTAGTGGGCTTCTTGGCCACACTGAATTGAGGTTACAGATGCCACCATCAATAGCACTTGCAACAAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATAGGGAATTCGATGATTTAGACTATGAAACTTTGAGAGCATTGGATTCCGACAATGTTCCAACAACACCTTCAATGAGTGAGGAACAAATAAATGCTCTTCCAGTGCATAAATACAAGGTTTCTGGTCCTCAAAGTGACCCTGCTGTGAACCAGCAGGCTTCATCTTCAGAATCTAATGAGAAGAGACAAGATTTAGTTAAAGCAGTAGGCGGTACCAAGTCCTTAGAGGATGAACTTACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCGTACGTAGTTTGCCATGTTTGCATCAGTTCCATGACAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTATGTAAATTCAGAGCAGTGCCCGGGTGGTCGGAACAGGGGCAAGAGGAAACGGATGCTTATATGGTCTAA 828 43.96 MSFVFRGTRVPDIENGLSGFIPERRAMRVHPTRSVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLQMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDPAVNQQASSSESNEKRQDLVKAVGGTKSLEDELTCSVCLEQVNVGELVRSLPCLHQFHDNCIDPWLRQQGTCPVCKFRAVPGWSEQGQEETDAYMV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4508525 4512977 - Sed0018949.1 Sed03g0750 706237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0750 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 260 IPR013083 -
Sed03g0750 275 SMART ring_2 214 254 IPR001841 -
Sed03g0750 275 SUPERFAMILY RING/U-box 206 261 - -
Sed03g0750 275 CDD RING-H2_PA-TM-RING 213 255 - -
Sed03g0750 275 PANTHER TARGET OF ERK KINASE MPK-1 2 259 - GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Sed03g0750 275 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Sed03g0750 275 Pfam Ring finger domain 213 255 IPR001841 -
Sed03g0750 275 MobiDBLite consensus disorder prediction 177 192 - -
Sed03g0750 275 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0750 Sed-Chr3:4508525 Sed11g2218 Sed-Chr11:35743773 1.10E-117 dispersed
Sed07g0060 Sed-Chr7:757386 Sed03g0750 Sed-Chr3:4508525 3.00E-09 transposed
Sed11g2217 Sed-Chr11:35743773 Sed03g0750 Sed-Chr3:4508525 1.20E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0750 K16283 - csv:101216306 473.781