Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0753 ATGGATTCTTCAACTTCCTCTCATCCCAAAAAACAGAGACATGATTCTAAAACTGAAGCTAAAGACAACCGCCGCCGACGAGGGCGGCCGCCGGGATCCAAAAACAAGCCTAAGCCACCCGTTGTCATAACCGACGACATTACTCCGGCGGCTCCGGCCAACGCATTCCAATGCCACGTGTTCGAAATCGCCGCCGCCGCCGACATAGCCGATTCCATTTCGAACTACGCCCTCCGCCGCCACCGCGGCCTCTCCGTTCTCAGTGCCACCGGCCCCGTCGCCAACGTCACTCTCCGGCACCCCTCCGCCCCCGCCGGCGTCATCACCCTTCACGACTGCTTCGACATCTTGTCTCTTTCCGGCGCTTTTCTTCCCCCGCCGTCCCCCCAAGGAGCTTTCGGGCTGACCGTCTTTCTCGCCGGCGGCCAGGGGCGGGTCGTCGGCGGGTTGGTTTCCGGTCCACTGATCGCCGCCGGTCCGGTGGTAGTTATTGCAGCTTCGTTTAGTACTGCTATATTTGAAAGATTGCCGGTTGAGGAAGAGAAAAGGGAAATGGAAGAAGATGAGAGGATGATGGTAATTTGA 585 58.46 MDSSTSSHPKKQRHDSKTEAKDNRRRRGRPPGSKNKPKPPVVITDDITPAAPANAFQCHVFEIAAAADIADSISNYALRRHRGLSVLSATGPVANVTLRHPSAPAGVITLHDCFDILSLSGAFLPPPSPQGAFGLTVFLAGGQGRVVGGLVSGPLIAAGPVVVIAASFSTAIFERLPVEEEKREMEEDERMMVI 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4533495 4534079 - Sed0016304.1 Sed03g0753 706240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0753 194 ProSiteProfiles PPC domain profile profile. 53 189 IPR005175 -
Sed03g0753 194 MobiDBLite consensus disorder prediction 1 26 - -
Sed03g0753 194 Pfam Plants and Prokaryotes Conserved (PCC) domain 58 169 IPR005175 -
Sed03g0753 194 PIRSF ESCAROLA 1 192 IPR014476 GO:0003680(InterPro)
Sed03g0753 194 Gene3D - 57 189 - -
Sed03g0753 194 MobiDBLite consensus disorder prediction 1 46 - -
Sed03g0753 194 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 184 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed03g0753 194 CDD DUF296 76 168 IPR005175 -
Sed03g0753 194 SUPERFAMILY AF0104/ALDC/Ptd012-like 53 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0753 Sed-Chr3:4533495 Sed07g2505 Sed-Chr7:40768217 4.00E-50 dispersed
Sed03g0753 Sed-Chr3:4533495 Sed07g2504 Sed-Chr7:40768217 4.00E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0753 - - - 0.0