Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0778 | ATGGAGTTGAAAACAGCAGATGTAGCAGAAGTTCAACAAGTACAGCAACATTTCCATGTCCTGGCAGTGGATGATAGCCTTATAGACAGAAAGCTTTTGGAGAAGCTCCTAAGAATTTCTTCATTTGAAGTGACCTGCGTAGAGTCCGGAGACAAAGCTCTTAGATATCTTGGTCTGCTTGATGACATTGACAAATTTTCTTCTTCTGTTGCTTCATTTTCTTCCCCACAACTCTCCCACCAACAGGAAGTCAAAGTCAACCTAATCATGACAGACTACTGTATGCCTGGAATGACTGGTTATGATCTACTCAAACGACTCAAGGGATCTTCATGGAAAGATGTTCCTGTTGTTGTCATGTCATCAGAGAACGAACCTTCAAGAATCAACATGTGCTTGGAAGAAGGGGCGGAGGAATTCCTTTTGAAGCCTCTTCAACTATCAGACGTGAAGAAGCTCGAGCCTCACCTTCAGAAGTCCCTCAGCCGCCGTTCATCTGCAGAAATAAAGGAAGAAGAAACAGTCGAAATCGAAATCACTAATTCCGACGCCATTGACGGCGAAAACATCTCGACAGCGGAAACTAATAAGAACGACAATAACAATGCCTTCAACAAGAGAAAAGCCGCGGATCCAGAGCCATCTGAAAAACGACCAAAGCTGAAAGAACTGCAAGCGGATGTATAA | 687 | 43.52 | MELKTADVAEVQQVQQHFHVLAVDDSLIDRKLLEKLLRISSFEVTCVESGDKALRYLGLLDDIDKFSSSVASFSSPQLSHQQEVKVNLIMTDYCMPGMTGYDLLKRLKGSSWKDVPVVVMSSENEPSRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLSRRSSAEIKEEETVEIEITNSDAIDGENISTAETNKNDNNNAFNKRKAADPEPSEKRPKLKELQADV | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4680177 | 4683216 | - | Sed0005190.1 | Sed03g0778 | 706265 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0778 | 228 | ProSiteProfiles | Response regulatory domain profile. | 19 | 158 | IPR001789 | GO:0000160(InterPro) | |
Sed03g0778 | 228 | MobiDBLite | consensus disorder prediction | 184 | 203 | - | - | |
Sed03g0778 | 228 | MobiDBLite | consensus disorder prediction | 180 | 228 | - | - | |
Sed03g0778 | 228 | Pfam | Response regulator receiver domain | 78 | 151 | IPR001789 | GO:0000160(InterPro) | |
Sed03g0778 | 228 | Gene3D | - | 19 | 221 | - | - | |
Sed03g0778 | 228 | SMART | REC_2 | 18 | 154 | IPR001789 | GO:0000160(InterPro) | |
Sed03g0778 | 228 | MobiDBLite | consensus disorder prediction | 204 | 228 | - | - | |
Sed03g0778 | 228 | SUPERFAMILY | CheY-like | 18 | 152 | IPR011006 | - | |
Sed03g0778 | 228 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 15 | 221 | IPR045279 | GO:0009736(InterPro) | |
Sed03g0778 | 228 | CDD | REC_typeA_ARR | 20 | 153 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3117 | Sed-Chr1:42897882 | Sed03g0778 | Sed-Chr3:4680177 | 5.60E-67 | dispersed | |
Sed01g3118 | Sed-Chr1:42897882 | Sed03g0778 | Sed-Chr3:4680177 | 1.20E-62 | dispersed | |
Sed03g0778 | Sed-Chr3:4680177 | Sed14g0016 | Sed-Chr14:229095 | 1.00E-44 | dispersed | |
Sed01g3116 | Sed-Chr1:42895891 | Sed03g0778 | Sed-Chr3:4680177 | 7.20E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37771 | PF00072 | Response_reg | 9.10E-18 | CL0304 | Sed | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0778 | K14492 | - | csv:101216267 | 284.263 |