Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0778 ATGGAGTTGAAAACAGCAGATGTAGCAGAAGTTCAACAAGTACAGCAACATTTCCATGTCCTGGCAGTGGATGATAGCCTTATAGACAGAAAGCTTTTGGAGAAGCTCCTAAGAATTTCTTCATTTGAAGTGACCTGCGTAGAGTCCGGAGACAAAGCTCTTAGATATCTTGGTCTGCTTGATGACATTGACAAATTTTCTTCTTCTGTTGCTTCATTTTCTTCCCCACAACTCTCCCACCAACAGGAAGTCAAAGTCAACCTAATCATGACAGACTACTGTATGCCTGGAATGACTGGTTATGATCTACTCAAACGACTCAAGGGATCTTCATGGAAAGATGTTCCTGTTGTTGTCATGTCATCAGAGAACGAACCTTCAAGAATCAACATGTGCTTGGAAGAAGGGGCGGAGGAATTCCTTTTGAAGCCTCTTCAACTATCAGACGTGAAGAAGCTCGAGCCTCACCTTCAGAAGTCCCTCAGCCGCCGTTCATCTGCAGAAATAAAGGAAGAAGAAACAGTCGAAATCGAAATCACTAATTCCGACGCCATTGACGGCGAAAACATCTCGACAGCGGAAACTAATAAGAACGACAATAACAATGCCTTCAACAAGAGAAAAGCCGCGGATCCAGAGCCATCTGAAAAACGACCAAAGCTGAAAGAACTGCAAGCGGATGTATAA 687 43.52 MELKTADVAEVQQVQQHFHVLAVDDSLIDRKLLEKLLRISSFEVTCVESGDKALRYLGLLDDIDKFSSSVASFSSPQLSHQQEVKVNLIMTDYCMPGMTGYDLLKRLKGSSWKDVPVVVMSSENEPSRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLSRRSSAEIKEEETVEIEITNSDAIDGENISTAETNKNDNNNAFNKRKAADPEPSEKRPKLKELQADV 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4680177 4683216 - Sed0005190.1 Sed03g0778 706265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0778 228 ProSiteProfiles Response regulatory domain profile. 19 158 IPR001789 GO:0000160(InterPro)
Sed03g0778 228 MobiDBLite consensus disorder prediction 184 203 - -
Sed03g0778 228 MobiDBLite consensus disorder prediction 180 228 - -
Sed03g0778 228 Pfam Response regulator receiver domain 78 151 IPR001789 GO:0000160(InterPro)
Sed03g0778 228 Gene3D - 19 221 - -
Sed03g0778 228 SMART REC_2 18 154 IPR001789 GO:0000160(InterPro)
Sed03g0778 228 MobiDBLite consensus disorder prediction 204 228 - -
Sed03g0778 228 SUPERFAMILY CheY-like 18 152 IPR011006 -
Sed03g0778 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 221 IPR045279 GO:0009736(InterPro)
Sed03g0778 228 CDD REC_typeA_ARR 20 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3117 Sed-Chr1:42897882 Sed03g0778 Sed-Chr3:4680177 5.60E-67 dispersed
Sed01g3118 Sed-Chr1:42897882 Sed03g0778 Sed-Chr3:4680177 1.20E-62 dispersed
Sed03g0778 Sed-Chr3:4680177 Sed14g0016 Sed-Chr14:229095 1.00E-44 dispersed
Sed01g3116 Sed-Chr1:42895891 Sed03g0778 Sed-Chr3:4680177 7.20E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37771 PF00072 Response_reg 9.10E-18 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0778 K14492 - csv:101216267 284.263