Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0794 ATGGAAGATTCTCCAGTTATGGGCCTTCTCACAGCACGCAAAACAGCGAATGCTGAATCTGATGGCATCAAGGAAAACAAAGACAAAGATGACAAAGATATTCCTAGTGAGAGTACAATTAAGAAAGCTATTATAAAAAGAACGCCTTATCTTAAAGCTAATTCGGAGAAAGTTACTATGGCTGGAGTTCGCCGCCTTCTGGAGGATGATCTTAAACTTACTAAATGTGCTCTCGATAGCTTCAAGAAGTTTATAAGCCAACAAGTAGAGGAGATATTGAATTCTTGTGAAGCTGCTGAACAAGTTTCTAATGAAAAGAAAGGTTCTCGTTCGAAAACTCCAAAAAAGGCAAGCAAAGAAAGCTCTCATTCTTCAGAAGGTAGCAGCAGTGAGGAGGAGAACGATGAAGTAAAACCTGGAAAGAAAAATGTAAAACCAGGAAAGAAAAATGCAACTAAAGGAAGAATAACGAACTCTAATGAATCGAAAAAGCGGAAAAGATCTACAAAGGAGACTGTCCCTGCCAAGAAGCAAAGCAAGCAGCATACATCAGAGGAAGATAACCATGAAGGTGGTGGAAATGTCTCCGAGGATGACAAGTCTGATTCATCCAATGAAAAACCTGCTAAGAAGGAAGTTTCAACTCCTTTTTATGGCAAGCGTGTGGAGCACTTGAAATCGGTTATCAAATCGTGTGGGATGAGTGTTCCTCCATCGATTTATAAGAAGGTCAAGCAGGCACCTGAAAGCAAACGTGAATCCCAACTTATAAAGGAGTTAGAAGGGATACTATCCAGAGAAGGATTGTCTGCTAATCCCACCGAAAAAGAAATTAAGGAAGTCAAAAAGAAGAAGGAAAGGGCCAAAGAACTTGAAGGCATTGACTTGAGTAATATTGTCTTAAGTTCACGTAGAAGATCCACAACCAGTTATTTACCACCACCACCTCCAAAACCGAAAACTCCAGTTAAAACAGATAGTGATAATACTGATGGGGAGGAGGATGAGGACGACGAAGAAGATGAAGACGACGAGGAGGATGATGACGACGAAGAGGAAAATGGTGATGCTGATGAAAGCCAGGGTGAAGAATTCAATGAGGATGACAATGAAGACAGTGATTGA 1125 40.62 MEDSPVMGLLTARKTANAESDGIKENKDKDDKDIPSESTIKKAIIKRTPYLKANSEKVTMAGVRRLLEDDLKLTKCALDSFKKFISQQVEEILNSCEAAEQVSNEKKGSRSKTPKKASKESSHSSEGSSSEEENDEVKPGKKNVKPGKKNATKGRITNSNESKKRKRSTKETVPAKKQSKQHTSEEDNHEGGGNVSEDDKSDSSNEKPAKKEVSTPFYGKRVEHLKSVIKSCGMSVPPSIYKKVKQAPESKRESQLIKELEGILSREGLSANPTEKEIKEVKKKKERAKELEGIDLSNIVLSSRRRSTTSYLPPPPPKPKTPVKTDSDNTDGEEDEDDEEDEDDEEDDDDEEENGDADESQGEEFNEDDNEDSD 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4793985 4801657 + Sed0010827.2 Sed03g0794 706281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0794 374 Coils Coil 271 291 - -
Sed03g0794 374 Pfam Histone chaperone domain CHZ 286 313 IPR019098 -
Sed03g0794 374 MobiDBLite consensus disorder prediction 272 293 - -
Sed03g0794 374 PANTHER HIRA-INTERACTING PROTEIN 3 1 373 IPR037647 GO:0005634(PANTHER)
Sed03g0794 374 MobiDBLite consensus disorder prediction 103 143 - -
Sed03g0794 374 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 34 94 IPR014876 -
Sed03g0794 374 MobiDBLite consensus disorder prediction 268 374 - -
Sed03g0794 374 MobiDBLite consensus disorder prediction 18 35 - -
Sed03g0794 374 MobiDBLite consensus disorder prediction 158 221 - -
Sed03g0794 374 MobiDBLite consensus disorder prediction 98 221 - -
Sed03g0794 374 SMART CHZ_2 285 320 IPR019098 -
Sed03g0794 374 MobiDBLite consensus disorder prediction 1 35 - -
Sed03g0794 374 MobiDBLite consensus disorder prediction 329 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0794 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0793 Sed-Chr3:4793985 Sed03g0794 Sed-Chr3:4793985 1.10E-149 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g282 . . . . . . . . . Cmo15g00703 . . . . Sed03g0794 . . Bhi04g01926 Tan11g1290 Cmetu03g0298 . Hepe02g2282 . Lcy10g1217 Cla08g00580 Cam08g0995 Cec08g0584 Cco08g0694 Clacu08g0704 . Cre08g0515 . . . Cone20ag0450 . . . Cme03g00572 Blo17g00180 . . . . Bpe14g00380 . Bma02g00220 . . . . . . Car15g00634 . . . . . . . . . . . . . . . . Lsi08g00426 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011404 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 2 1 1 31