Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0804 ATGGTGAAGAAGGAATTAGCAAATGATGTTCATCCATCAACAGCTCCAACAAGTAAAAAGAAGTACAAGGGAGTAAGAATGAGAAGCTGGGGCTCATGGGTTTCTGAAATTAGAGCTCCAAATCAAAAGACAAGGATATGGTTAGGTTCGTATTCCACGGCCGAGGCCGCCGCCCGAGCCTACGACGCCGCCCTCTTGTGCCTCAAGGGCTCCTCTGCCCATCTCAATTTCCCGATGTCTTCGTCTTCATTCGCACATTTTCACAACCTCTTTTCTAACAACGAGGACAATGTTATGTCTCCCAAGTCCATTCAAAGAGTCGCTGCCGAAGCTGCTGCCAACGCCGCCTTCTTCGATGACAATGTCGACCATACGGCAAGCTCGACCTGTATCCCTCCATCGCCACCTCCTTCCTCTGTCTCGTCGACGAATTACGATTCGTCGACGATGACGGAGCCGTCGTGGTACAACTTTGATGACATACTCTCCCCTAAGTATGTTGGGCAAATGATGGATGGGACTCTATTTGATCCACCAAATATTGATGATTTTTATGAAGAAAGTGATATTCGTTTATGGAGCTTCTGCTGA 591 47.72 MVKKELANDVHPSTAPTSKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSAHLNFPMSSSSFAHFHNLFSNNEDNVMSPKSIQRVAAEAAANAAFFDDNVDHTASSTCIPPSPPPSSVSSTNYDSSTMTEPSWYNFDDILSPKYVGQMMDGTLFDPPNIDDFYEESDIRLWSFC 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4850597 4851493 + Sed0014263.1 Sed03g0804 706291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0804 196 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0804 196 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0804 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 148 IPR051032 -
Sed03g0804 196 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0804 196 MobiDBLite consensus disorder prediction 1 22 - -
Sed03g0804 196 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0804 196 SMART rav1_2 21 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0804 196 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677(InterPro)
Sed03g0804 196 FunFam ethylene-responsive transcription factor ERF014-like 20 80 - -
Sed03g0804 196 CDD AP2 20 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0804 196 Pfam AP2 domain 21 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0804 Sed-Chr3:4850597 Sed12g1463 Sed-Chr12:15179252 7.40E-44 dispersed
Sed03g0804 Sed-Chr3:4850597 Sed08g0941 Sed-Chr8:8158877 4.80E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37776 PF00847 AP2 3.50E-12 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0804 - - - 0.0