Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0822 ATGGCATCTGCCATGGCTAAACCCAAAACTCAGAGAAAGAACATCAGAGAGAATCATGAAAACCAGAAACCAAAGCCGCCGTCTTGGACAGTTGTTAGAGGGATATTCAGTTGCAAGTACCTGCAGCCTCAACCACAACCAGAAAAACAAAACCAACAACAACAGAATCAATTGCCACGCAAAGAGAAAAAACAGGATCAGCAGGCAACAGAAGAGAGTATCAAAAACTGTAAGAAAATGAGGTGTTCGGGTTCGCTTTGTAGCAACACGAAGATAACAACACACAGGCTTGAAGCAGCATCAGCAGCAGCAGCAACAGAGGTTCATAAGAAAAGGGCATTGGCTTCAATGGGGTCTAAAAACAATGAGTCTTCGAGTTCGAGACGATCCACAAAAGCTCTTCCTTTGAACGAACAAAATGGTGTTCTATCAGCCACAACATGTTCTTCGTCTTCTTCTGATTCCTCCAATGGTGCTTCTTTCAAGGGAATGCCTTTCAGAAGGTTCTATGGCTGTTATGAATGCAAAATGGTGATTGACCCTGTTCTTGGAATGACTAGAGATCCTTCTCTTAGAGCAACCATTTGCCCTTGTCCTCAATGTGGTGAGATTTTCACAAAAGCTCAAACTTTAGAGCTCCACCAGAGTGTTAGACATGCAGTATCTGAACTGGGTCCTGAAGACACGAGCAAGAACATAGTGGAAATCATATTCCAGTCGAGCTGGCTAAAAAAGCAAGCTCCAATTTGCAAAATTGAAAGGATTCTCAAAGTCCAAAACACTCCAAAAACCATCTCAAAATTCGAGGAATATAGGGACTCCATTAAAGCCAAAGCTACAAAGCTTCCAAAGAAGCATCCACGTTGCATAGCAGATGGTAATGAACTCCTAAGGTTCCATTGCACCACATTGGCCTGCTCATTGGGCCTAAATGGCACCTCCAATCTCTGCAGTTCAATCCCACAATGCAATGTCTGTAACATAATAAAGAATGGGTTCAAGGTGGCTGCCGAGGCAACCGGCGGGGACGTCGGAAAGGGCATTCTAACAACAGCAACAAGCGGAAAGGCTCACGACAGTGCCGGAATATCATCGGACGGGAACGACAAAAGGGCAATGCTGGTTTGCCGGGTGATAGCTGGTAGGGTGAAGAAGAGTTCAGAAGGCAGTATGGAGGATTATGACTCATTGGCCGGGGCAGCAGGCATGTATTCCAATTTGGATGAGTTATACGTGTTCAGTCCCAAGGCAATATTGCCTTGTTTTGTTGTCATTTATGGAGGGTTTTAA 1290 44.57 MASAMAKPKTQRKNIRENHENQKPKPPSWTVVRGIFSCKYLQPQPQPEKQNQQQQNQLPRKEKKQDQQATEESIKNCKKMRCSGSLCSNTKITTHRLEAASAAAATEVHKKRALASMGSKNNESSSSRRSTKALPLNEQNGVLSATTCSSSSSDSSNGASFKGMPFRRFYGCYECKMVIDPVLGMTRDPSLRATICPCPQCGEIFTKAQTLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQAPICKIERILKVQNTPKTISKFEEYRDSIKAKATKLPKKHPRCIADGNELLRFHCTTLACSLGLNGTSNLCSSIPQCNVCNIIKNGFKVAAEATGGDVGKGILTTATSGKAHDSAGISSDGNDKRAMLVCRVIAGRVKKSSEGSMEDYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGGF 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4918291 4919668 - Sed0022784.1 Sed03g0822 706309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0822 429 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 28 426 - -
Sed03g0822 429 MobiDBLite consensus disorder prediction 43 58 - -
Sed03g0822 429 MobiDBLite consensus disorder prediction 59 75 - -
Sed03g0822 429 ProSitePatterns Zinc finger C2H2 type domain signature. 196 219 IPR013087 -
Sed03g0822 429 SUPERFAMILY ADP-ribosylation 221 427 - -
Sed03g0822 429 MobiDBLite consensus disorder prediction 1 75 - -
Sed03g0822 429 MobiDBLite consensus disorder prediction 117 136 - -
Sed03g0822 429 MobiDBLite consensus disorder prediction 111 136 - -
Sed03g0822 429 Gene3D - 220 427 - -
Sed03g0822 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 224 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0822 Sed-Chr3:4918291 Sed04g3174 Sed-Chr4:42478358 7.50E-57 dispersed
Sed05g3751 Sed-Chr5:45372689 Sed03g0822 Sed-Chr3:4918291 1.60E-55 transposed
Sed07g1906 Sed-Chr7:32919466 Sed03g0822 Sed-Chr3:4918291 1.00E-58 transposed
Sed10g0353 Sed-Chr10:2162110 Sed03g0822 Sed-Chr3:4918291 2.60E-42 transposed
Sed13g1157 Sed-Chr13:14248788 Sed03g0822 Sed-Chr3:4918291 2.50E-59 transposed
Sed13g1577 Sed-Chr13:20939216 Sed03g0822 Sed-Chr3:4918291 2.20E-82 transposed
Sed01g3040 Sed-Chr1:34328683 Sed03g0822 Sed-Chr3:4918291 8.60E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37777 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0822 - - - 0.0