Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0842 ATGCATCATTTTCCACAGTTTTTCTCTCCTAGGAACCGAAGAAAAGTTATGGATCCGAGAAAAATCGCCGGTAAACCCAAGCTTGGCCGTGTAAATGCGGCGAAGAACATCGAGTATGATGCTGCTTCCACTTCGTCTTCTTCGTTTGATGATTCTTCTGGGTCCCTGTATACTCGGTCTATGGAAACGCCGGATCCGTCCAGTTTTCGAATTGAAGGGCTCGACGGCGAAGTTGATTACATCTGTCGGACTTTAGGGTTAAAGGGTCCCGATGATTTTGGAATTCCGATTGAGGCTTGGGAGGCTAGGAAGATTCGTTCACCTTCCGAGCTTTTACCCAAATCCAAGTTTCATCATATGAATAGCCCTAAGAAAGATAAAGAAATTGAAGATGAAATTTGCCGGCGGGTTAAGGATTCGGTTCGAATCTCCGGTGAGTTTTCCGATTTGACTGAACGCCGTATGGCTACTGCTACTGGTTGCAGCTCTAGCAGTGGAATCAATGGCGCTCGGCCTCCCTCGCTTAAGCCGCCGCCGCCGATGCGGCTTCCGGGTGTCGATAATGCTAGCTCGAATTGGGATATTTTGAAGACTTTTGCTCCTTTAGTTGAGGACAATGAAGAGGAAGTTCAAGAACGGATTGAACCCTTGGTTGGGGTTAGAGAGGCGAATATTGGGTCTTGGGGTTCGTTTACAACCTCGAATGATGATGATTCTTCGAGCAGTACTACTGATCCTGCAAATATTTCGCCCAATTTGAGATGTAAACCCATCATCACATCTTGGGTTAGGGGAAAGCGTTTAGGGAGCGGTTCATTTGGATCAGTATATGAAGCTATTTCACAGGAGGGAACTTTTTTTGCAGTTAAAGAGGTTTCACTGCTGGATGAAGATAGCCACGGAAGACAAAGTATCTATCAGCTTCAGCAGGAGATAGCTCTTCTAAGTGAGTTTGAGCATGAGAACATAGTTCAATACTACGGCACGGATACGGAGCAGGATGGGTCAAAACTTTATATTTTCCTTGAGCTCGTATCTCAGGGCTCCCTTATGAGTCTATATCAGAGGAGTCACCTTCTGGATTCCATTGTTTCTGCTTATACAAGGCAGATTCTGTCTGGTTTAAAGTATCTTCATGAGCAAAATGTGGTTCACAGGGATATTAAGTGTGCTAATATATTGGTGGATGTGAAAGGACTTGTGAAGCTCGCAGATTTTGGTTTGGCGAAGGCAACAAAATTGAACGATGTTAAATCTTGTAAGGGAACTGCGTTCTGGATGGCACCCGAGGTGGTTAATGGGAAGGGCCAAGGATACGGTCTTCCAGCTGATATTTGGAGCCTTGGGTGCACGGTTTTGGAATTGTTAACTCGAAAGCTTCCATACTCAGAATTCGAATCTCCTATGCAGGCCCTATATAAGATTGGAAAAGGCAGACCGCCTACGATTCCCGAGTCTCTCTCCGGAGATGCCCGAGATTTCATTCTGCAGTGCCTTCAAGTTAATCCGCAAGAACGCCCAACTGCTGCTGATCTTTTAAATCACCAGTTTGTGAAAATACCAGATTCCAGTTTATCAGGGTCTGCATCTCCATACAACAAGCCAGGCAGAAGGATTTGA 1620 45.43 MHHFPQFFSPRNRRKVMDPRKIAGKPKLGRVNAAKNIEYDAASTSSSSFDDSSGSLYTRSMETPDPSSFRIEGLDGEVDYICRTLGLKGPDDFGIPIEAWEARKIRSPSELLPKSKFHHMNSPKKDKEIEDEICRRVKDSVRISGEFSDLTERRMATATGCSSSSGINGARPPSLKPPPPMRLPGVDNASSNWDILKTFAPLVEDNEEEVQERIEPLVGVREANIGSWGSFTTSNDDDSSSSTTDPANISPNLRCKPIITSWVRGKRLGSGSFGSVYEAISQEGTFFAVKEVSLLDEDSHGRQSIYQLQQEIALLSEFEHENIVQYYGTDTEQDGSKLYIFLELVSQGSLMSLYQRSHLLDSIVSAYTRQILSGLKYLHEQNVVHRDIKCANILVDVKGLVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVNGKGQGYGLPADIWSLGCTVLELLTRKLPYSEFESPMQALYKIGKGRPPTIPESLSGDARDFILQCLQVNPQERPTAADLLNHQFVKIPDSSLSGSASPYNKPGRRI 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5091754 5096918 - Sed0013583.2 Sed03g0842 706329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0842 539 Gene3D Transferase(Phosphotransferase) domain 1 261 532 - -
Sed03g0842 539 MobiDBLite consensus disorder prediction 1 29 - -
Sed03g0842 539 MobiDBLite consensus disorder prediction 42 68 - -
Sed03g0842 539 PRINTS Tyrosine kinase catalytic domain signature 487 509 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0842 539 PRINTS Tyrosine kinase catalytic domain signature 342 355 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0842 539 PRINTS Tyrosine kinase catalytic domain signature 377 395 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0842 539 PRINTS Tyrosine kinase catalytic domain signature 443 465 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0842 539 MobiDBLite consensus disorder prediction 156 181 - -
Sed03g0842 539 ProSiteProfiles Protein kinase domain profile. 262 518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0842 539 MobiDBLite consensus disorder prediction 42 65 - -
Sed03g0842 539 ProSitePatterns Protein kinases ATP-binding region signature. 268 290 IPR017441 GO:0005524(InterPro)
Sed03g0842 539 FunFam Mitogen-activated protein kinase 1, putative, expressed 260 530 - -
Sed03g0842 539 MobiDBLite consensus disorder prediction 229 250 - -
Sed03g0842 539 Pfam Protein kinase domain 264 518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0842 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 383 395 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0842 539 SUPERFAMILY Protein kinase-like (PK-like) 241 519 IPR011009 -
Sed03g0842 539 MobiDBLite consensus disorder prediction 156 170 - -
Sed03g0842 539 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 174 519 IPR050538 -
Sed03g0842 539 SMART serkin_6 262 518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3023 Sed-Chr1:32411447 Sed03g0842 Sed-Chr3:5091754 1.00E-220 dispersed
Sed03g0842 Sed-Chr3:5091754 Sed07g1017 Sed-Chr7:7384815 8.50E-66 dispersed
Sed03g0841 Sed-Chr3:5091754 Sed03g0842 Sed-Chr3:5091754 5.3e-310 tandem
Sed03g0842 Sed-Chr3:5091754 Sed03g0843 Sed-Chr3:5091754 1.00E-265 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78878 PF00069 Pkinase 4.30E-66 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0842 K13414 - csv:101218538 836.254