Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0843 ATGCATCATTTTCCACAGTTTTTCTCTCCTAGGAACCGAAGAAAAGTTATGGATCCGAGAAAAATCGCCGGTAAACCCAAGCTTGGCCGTGTAAATGCGGCGAAGAACATCGAGTATGATGCTGCTTCCACTTCGTCTTCTTCGTTTGATGATTCTTCTGGGTCCCTGTATACTCGGTCTATGGAAACGCCGGATCCGTCCAGTTTTCGAATTGAAGGGCTCGACGGCGAAGTTGATTACATCTGTCGGACTTTAGGGTTAAAGGGTCCCGATGATTTTGGAATTCCGATTGAGGCTTGGGAGGCTAGGAAGATTCGTTCACCTTCCGAGCTTTTACCCAAATCCAAGTTTCATCATATGAATAGCCCTAAGAAAGATAAAGAAATTGAAGATGAAATTTGCCGGCGGGTTAAGGATTCGGTTCGAATCTCCGGTGAGTTTTCCGATTTGACTGAACGCCGTATGGCTACTGCTACTGGTTGCAGCTCTAGCAGTGGAATCAATGGCGCTCGGCCTCCCTCGCTTAAGCCGCCGCCGCCGATGCGGCTTCCGGGTGTCGATAATGCTAGCTCGAATTGGGATATTTTGAAGACTTTTGCTCCTTTAGTTGAGGACAATGAAGAGGAAGTTCAAGAACGGATTGAACCCTTGGTTGGGGTTAGAGAGGCGAATATTGGGTCTTGGGGTTCGTTTACAACCTCGAATGATGATGATTCTTCGAGCAGTACTACTGATCCTGCAAATATTTCGCCCAATTTGAGATGTAAACCCATCATCACATCTTGGGTTAGGGGAAAGCGTTTAGGGAGCGGTTCATTTGGATCAGTATATGAAGCTATTTCACAGGAGGGAACTTTTTTTGCAGTTAAAGAGGTTTCACTGCTGGATGAAGATAGCCACGGAAGACAAAGTATCTATCAGCTTCAGCAGGAGATAGCTCTTCTAAGTGAGTTTGAGCATGAGAACATAGTTCAATACTACGGCACGGATACGGAGCAGGATGGGTCAAAACTTTATATTTTCCTTGAGCTCGTATCTCAGGGCTCCCTTATGAGTCTATATCAGAGGAGTCACCTTCTGGATTCCATTGTTTCTGCTTATACAAGGCAGATTCTGTCTGGTTTAAAGTATCTTCATGAGCAAAATGTGGTTCACAGGGATATTAAGTGTGCTAATATATTGGTGGATGTGAAAGGACTTGTGAAGCTCGCAGATTTTGGTTTGGCGAAGGCAACAAAATTGAACGATGTTAAATCTTGTAAGGGAACTGCGTTCTGGATGGCACCCGAGGTGGTTAATGGGAAGGGCCAAGGATACGGTCTTCCAGCTGATATTTGGAGCCTTGGGTGCACGGTTTTGGAATTGTTAACTCGAAAGCTTCCATACTCAGAATTCGAATCTGTACGTGCCACCTTTATTCTCCTTCTCCATCAATGA 1437 45.16 MHHFPQFFSPRNRRKVMDPRKIAGKPKLGRVNAAKNIEYDAASTSSSSFDDSSGSLYTRSMETPDPSSFRIEGLDGEVDYICRTLGLKGPDDFGIPIEAWEARKIRSPSELLPKSKFHHMNSPKKDKEIEDEICRRVKDSVRISGEFSDLTERRMATATGCSSSSGINGARPPSLKPPPPMRLPGVDNASSNWDILKTFAPLVEDNEEEVQERIEPLVGVREANIGSWGSFTTSNDDDSSSSTTDPANISPNLRCKPIITSWVRGKRLGSGSFGSVYEAISQEGTFFAVKEVSLLDEDSHGRQSIYQLQQEIALLSEFEHENIVQYYGTDTEQDGSKLYIFLELVSQGSLMSLYQRSHLLDSIVSAYTRQILSGLKYLHEQNVVHRDIKCANILVDVKGLVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVNGKGQGYGLPADIWSLGCTVLELLTRKLPYSEFESVRATFILLLHQ 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5091754 5096918 - Sed0013583.3 Sed03g0843 706330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0843 478 SMART serkin_6 262 477 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0843 478 MobiDBLite consensus disorder prediction 42 68 - -
Sed03g0843 478 MobiDBLite consensus disorder prediction 1 29 - -
Sed03g0843 478 Gene3D Transferase(Phosphotransferase) domain 1 261 478 - -
Sed03g0843 478 MobiDBLite consensus disorder prediction 156 181 - -
Sed03g0843 478 ProSiteProfiles Protein kinase domain profile. 262 478 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0843 478 MobiDBLite consensus disorder prediction 42 65 - -
Sed03g0843 478 ProSitePatterns Protein kinases ATP-binding region signature. 268 290 IPR017441 GO:0005524(InterPro)
Sed03g0843 478 SUPERFAMILY Protein kinase-like (PK-like) 239 467 IPR011009 -
Sed03g0843 478 MobiDBLite consensus disorder prediction 229 250 - -
Sed03g0843 478 FunFam Protein kinase, putative 258 471 - -
Sed03g0843 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 383 395 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0843 478 Pfam Protein kinase domain 264 464 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0843 478 MobiDBLite consensus disorder prediction 156 170 - -
Sed03g0843 478 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 165 472 IPR050538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0841 Sed-Chr3:5091754 Sed03g0843 Sed-Chr3:5091754 1.00E-265 dispersed
Sed03g0843 Sed-Chr3:5091754 Sed13g0133 Sed-Chr13:862964 3.10E-51 dispersed
Sed03g0842 Sed-Chr3:5091754 Sed03g0843 Sed-Chr3:5091754 1.00E-265 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78879 PF00069 Pkinase 5.40E-57 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0843 K13414 - csv:101218538 721.465