Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g0848 | ATGGGGTCGATAGACGTCCAATCAGCCAGTGCCGAAAATGGATCGACCGCCGTTTCCGGCGATGGTGGTGAAAACCCAGATCCCGGCGGCCCTGCGAACCAGACATCGAACGATTCTGAAGGAACGGCGGCGAAAGAATTGGGGACGACGCCGAAGCGTAGTATGTGCTCCAACATGCCTGCTCTGGACGTGGGGACTCGCGTGATGTGCCGGTGGAGAGACGGGAAGTACCATCCCGTTAAGGTCATCGAACGTCGGAAGTTGCACGCTACTACTGGCTACACTGAATACGAGTACTATGTCCACTACACCGAGTTTAATAGGAGACTTGATGAGTGGGTGAAGCTTGACCAACTTGACCTTGAATCAGTTGAGACGGTTGTGGATGAGAAAGTGGAGGACAAGGTAACAGGATTGAAGATGACTCGACACCAGAAGCGAAAGATTGATGAAACACATGTTGAGGGTCATGAGGAACTTGATGCTGCCAGCTTGAGGGAACATGAAGAATTTACGAAAGTGAAAAATATTGCAACAATTGAACTTGGAAGATATGAGATTGAGACATGGTATTTTTCCCCCTTTCCACCGGAATACAATGACACTACAAAGCTCTATTTTTGTGAATTTTGTCTCAATTTCATGAAGCGCAAAGAACAGCTCCAGAGACATATGAGGAAGTGTGATCTGAAGCATCCTCCTGGTGATGAAATATATCGATGTGGTACTTTGTCAATGTTTGAGGTTGATGGGAAAAAGAACAAGGTTTATGGGCAGAATCTTTGTTACTTAGCAAAGTTATTTTTGGACCACAAGACTCTATACTACGATGTTGACCTTTTTCTATTCTATGTCTTGTGTGAGTGTGATGATCGAGGGTGTCACATGGTTGGGTATTTTTCAAAGGAAAAGCATTCAGAGGAATCCTATAATTTGGCATGCATTCTCACCCTTCCTCCTTATCAAAGGAAGGGTTATGGCAAGTTCTTAATAGCTTTTTCATATGAGCTCTCCAAGAAAGAAAACAAAGTTGGGACTCCAGAGAGACCTCTTTCTGATCTTGGGTTGGTGAGCTACAGAGGATACTGGACCAGGGTTCTCTTGGACATCTTGAAAAGGCACAAGGGCAATATCTCTATCAAGGAGCTAAGTGACATGACAGCTATCAAAGCTGAAGATATTTTGAACACACTTCAGGGCCTGGAGTTGATTCAATACAGGAAAGGGCAGCATGTTATATGTGCTGACCCAAAGGTGCTGGATCGTCATCTCAAAGCTGCTGGCCGTGGGGGCCTAGATGTTGATGTTAGCAAATTGATCTGGACTCCATATAGAGAACAGGGCTGA | 1347 | 45.29 | MGSIDVQSASAENGSTAVSGDGGENPDPGGPANQTSNDSEGTAAKELGTTPKRSMCSNMPALDVGTRVMCRWRDGKYHPVKVIERRKLHATTGYTEYEYYVHYTEFNRRLDEWVKLDQLDLESVETVVDEKVEDKVTGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDTTKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRCGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKENKVGTPERPLSDLGLVSYRGYWTRVLLDILKRHKGNISIKELSDMTAIKAEDILNTLQGLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDVSKLIWTPYREQG | 448 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 5141545 | 5147384 | + | Sed0027470.1 | Sed03g0848 | 706335 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g0848 | 448 | MobiDBLite | consensus disorder prediction | 29 | 44 | - | - | |
| Sed03g0848 | 448 | SMART | chromo_7 | 76 | 136 | IPR000953 | - | |
| Sed03g0848 | 448 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
| Sed03g0848 | 448 | ProSiteProfiles | MYST-type histone acetyltransferase (HAT) domain profile. | 172 | 443 | IPR002717 | GO:0004402(InterPro)|GO:0006355(InterPro) | |
| Sed03g0848 | 448 | SUPERFAMILY | Chromo domain-like | 54 | 173 | IPR016197 | - | |
| Sed03g0848 | 448 | FunFam | Histone acetyltransferase | 171 | 228 | - | - | |
| Sed03g0848 | 448 | Gene3D | - | 54 | 172 | - | - | |
| Sed03g0848 | 448 | FunFam | Histone acetyltransferase | 231 | 358 | - | - | |
| Sed03g0848 | 448 | Gene3D | - | 351 | 431 | IPR036388 | - | |
| Sed03g0848 | 448 | CDD | NAT_SF | 284 | 342 | - | - | |
| Sed03g0848 | 448 | Gene3D | - | 173 | 229 | - | - | |
| Sed03g0848 | 448 | CDD | CBD_MOF_like | 65 | 135 | - | - | |
| Sed03g0848 | 448 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Sed03g0848 | 448 | Gene3D | - | 231 | 443 | - | - | |
| Sed03g0848 | 448 | Pfam | RNA binding activity-knot of a chromodomain | 62 | 121 | IPR025995 | - | |
| Sed03g0848 | 448 | Pfam | MOZ/SAS family | 233 | 410 | IPR002717 | GO:0004402(InterPro)|GO:0006355(InterPro) | |
| Sed03g0848 | 448 | FunFam | Histone acetyltransferase | 351 | 430 | - | - | |
| Sed03g0848 | 448 | Pfam | MYST family zinc finger domain | 174 | 228 | IPR040706 | - | |
| Sed03g0848 | 448 | PANTHER | HISTONE ACETYLTRANSFERASE | 39 | 444 | IPR050603 | GO:0000790(PANTHER)|GO:0003712(PANTHER)|GO:0045892(PANTHER)|GO:0045944(PANTHER) | |
| Sed03g0848 | 448 | FunFam | Histone acetyltransferase | 51 | 172 | - | - | |
| Sed03g0848 | 448 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 173 | 444 | IPR016181 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g0848 | K11308 | - | csv:101217824 | 810.061 |