Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0848 ATGGGGTCGATAGACGTCCAATCAGCCAGTGCCGAAAATGGATCGACCGCCGTTTCCGGCGATGGTGGTGAAAACCCAGATCCCGGCGGCCCTGCGAACCAGACATCGAACGATTCTGAAGGAACGGCGGCGAAAGAATTGGGGACGACGCCGAAGCGTAGTATGTGCTCCAACATGCCTGCTCTGGACGTGGGGACTCGCGTGATGTGCCGGTGGAGAGACGGGAAGTACCATCCCGTTAAGGTCATCGAACGTCGGAAGTTGCACGCTACTACTGGCTACACTGAATACGAGTACTATGTCCACTACACCGAGTTTAATAGGAGACTTGATGAGTGGGTGAAGCTTGACCAACTTGACCTTGAATCAGTTGAGACGGTTGTGGATGAGAAAGTGGAGGACAAGGTAACAGGATTGAAGATGACTCGACACCAGAAGCGAAAGATTGATGAAACACATGTTGAGGGTCATGAGGAACTTGATGCTGCCAGCTTGAGGGAACATGAAGAATTTACGAAAGTGAAAAATATTGCAACAATTGAACTTGGAAGATATGAGATTGAGACATGGTATTTTTCCCCCTTTCCACCGGAATACAATGACACTACAAAGCTCTATTTTTGTGAATTTTGTCTCAATTTCATGAAGCGCAAAGAACAGCTCCAGAGACATATGAGGAAGTGTGATCTGAAGCATCCTCCTGGTGATGAAATATATCGATGTGGTACTTTGTCAATGTTTGAGGTTGATGGGAAAAAGAACAAGGTTTATGGGCAGAATCTTTGTTACTTAGCAAAGTTATTTTTGGACCACAAGACTCTATACTACGATGTTGACCTTTTTCTATTCTATGTCTTGTGTGAGTGTGATGATCGAGGGTGTCACATGGTTGGGTATTTTTCAAAGGAAAAGCATTCAGAGGAATCCTATAATTTGGCATGCATTCTCACCCTTCCTCCTTATCAAAGGAAGGGTTATGGCAAGTTCTTAATAGCTTTTTCATATGAGCTCTCCAAGAAAGAAAACAAAGTTGGGACTCCAGAGAGACCTCTTTCTGATCTTGGGTTGGTGAGCTACAGAGGATACTGGACCAGGGTTCTCTTGGACATCTTGAAAAGGCACAAGGGCAATATCTCTATCAAGGAGCTAAGTGACATGACAGCTATCAAAGCTGAAGATATTTTGAACACACTTCAGGGCCTGGAGTTGATTCAATACAGGAAAGGGCAGCATGTTATATGTGCTGACCCAAAGGTGCTGGATCGTCATCTCAAAGCTGCTGGCCGTGGGGGCCTAGATGTTGATGTTAGCAAATTGATCTGGACTCCATATAGAGAACAGGGCTGA 1347 45.29 MGSIDVQSASAENGSTAVSGDGGENPDPGGPANQTSNDSEGTAAKELGTTPKRSMCSNMPALDVGTRVMCRWRDGKYHPVKVIERRKLHATTGYTEYEYYVHYTEFNRRLDEWVKLDQLDLESVETVVDEKVEDKVTGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDTTKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRCGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKENKVGTPERPLSDLGLVSYRGYWTRVLLDILKRHKGNISIKELSDMTAIKAEDILNTLQGLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDVSKLIWTPYREQG 448
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 5141545 5147384 + Sed0027470.1 Sed03g0848 706335
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0848 448 MobiDBLite consensus disorder prediction 29 44 - -
Sed03g0848 448 SMART chromo_7 76 136 IPR000953 -
Sed03g0848 448 MobiDBLite consensus disorder prediction 1 58 - -
Sed03g0848 448 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 172 443 IPR002717 GO:0004402(InterPro)|GO:0006355(InterPro)
Sed03g0848 448 SUPERFAMILY Chromo domain-like 54 173 IPR016197 -
Sed03g0848 448 FunFam Histone acetyltransferase 171 228 - -
Sed03g0848 448 Gene3D - 54 172 - -
Sed03g0848 448 FunFam Histone acetyltransferase 231 358 - -
Sed03g0848 448 Gene3D - 351 431 IPR036388 -
Sed03g0848 448 CDD NAT_SF 284 342 - -
Sed03g0848 448 Gene3D - 173 229 - -
Sed03g0848 448 CDD CBD_MOF_like 65 135 - -
Sed03g0848 448 MobiDBLite consensus disorder prediction 1 20 - -
Sed03g0848 448 Gene3D - 231 443 - -
Sed03g0848 448 Pfam RNA binding activity-knot of a chromodomain 62 121 IPR025995 -
Sed03g0848 448 Pfam MOZ/SAS family 233 410 IPR002717 GO:0004402(InterPro)|GO:0006355(InterPro)
Sed03g0848 448 FunFam Histone acetyltransferase 351 430 - -
Sed03g0848 448 Pfam MYST family zinc finger domain 174 228 IPR040706 -
Sed03g0848 448 PANTHER HISTONE ACETYLTRANSFERASE 39 444 IPR050603 GO:0000790(PANTHER)|GO:0003712(PANTHER)|GO:0045892(PANTHER)|GO:0045944(PANTHER)
Sed03g0848 448 FunFam Histone acetyltransferase 51 172 - -
Sed03g0848 448 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 173 444 IPR016181 -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0848 K11308 - csv:101217824 810.061