Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0853 ATGGATTCAAGGGGCCATTCCAATGGCGGAGAACTTGAAACAAAAGAGATGGACATTACAAGTCTTTCATCTTCACGCAACAATTCTCAGTTCATTCACAAAGTGGGAGTTCCACCAAAGCAAAATCTCTTCAAAGAGTTTACAGCCACAGTGAAAGAGACTTTCTTTTCCGACGATCCTCTGCGAACGTTCAAGGATCAATCGAAGTCCCGAAAGTTCGTCCTCGGAATTCAGGCTGTTTTTCCAATATTTGAATGGGGGAGGAATTACAATCTCACCAAATTCAGAGGAGATTTGATTGCTGGATTCACCATTGCAAGTCTGTGTATTCCACAGGACATAGGGTATGCAAACCTAGCTAATTTGGCTCCTCAGTATGGCTTATATTCCAGTTTTGTACCACCACTGGTTTATGCTTTGATGGGTAGCTCAAGAGACATAGCGATTGGACCAGTGGCTGTTGTCTCTCTATTGCTAGGAACTTTGCTTCAAAAGGAGATTGATTACCATACACATCCAGAAGAGTATCTGCGCCTTGCATTTACAGCTACTTTTTTTGCTGGGATCACCCAAGCCACATTAGGGATCCTAAGGTTGGGTTTTCTGATTGACTTTCTATCCCATGCTGCCATTGTTGGTTTTATGGGTGGAGCTGCCATCACTATTGCCCTTCAACAGCTTAAAGGCTTTCTCGGTATCAAAAAATTTACCAAGAAAACGGACATTATCTCTGTAATGCGCTCAGTATTTGCAGCAGCGCATCATGGATGGAACTGGCAGACTATAGTCCTTGGAGTAGCTTTCCTAAGTTTTCTTCTATTTGCTAAGTATATTGGAAAGAAGAACAAGAGCCTTTTTTGGGTGCCTGCAATTGCTCCCTTAATATCAGTTATACTGTCCACCTTCTTTGTTTACATCACTCATGCAGACGAGAAAGGTGTCGCAATTGTGAAACACATAGAGAAAGGAATCAATCCGTCGTCGGTGAAGCAAATTTACTTCACTGGTGACAACCTCCTCAAAGGGTTCAGGATTGGCATTGTGGCTGGCATGATAGCATTAACGGAAGCCACTGCAATTGGAAGGACATTTGCGTCCATGAAGGACTACCAGCTTGATGGTAACAAAGAAATGGTGGCACTGGGAACAATGAATGTTATTGGCTCAATGACTTCCTGCTATGTGGCAACAGGCTCCTTCTCTCGTTCAGCTGTGAATTACATGTCTGGCTGCCAAACTGCAGTCTCAAACATTGTTATGTCCTGTGTTGTATTTCTAACTCTAGAGTTCATCACTCCCCTTTTCAAGTACACTCCAAATGCTATTCTCGCTGTCATCATTATCTCTGCTGTGATCAACTTGATTGACATTCAAGCAGCTATTTTGCTTTGGAAAATTGATAAATTTGACTTTGTTGCTTGTTTGGGAGCCTTTTTCGGTGTGATTTTTGCTAGTGTTGAGATAGGACTCCTAATTGCTGTCTCTATATCATTTGCTAAGATACTGTTACAAGTAACCAGGCCACGGGTTGCGGTACTCGGAAAGATCCCTAGGACAACAGTGTACAGAAACACCCAACAATATCCAGAAGCAACAAGGGTTCCTGGTGTTCTAATTGTCAGAGTTGATTCTGCAATTTACTTTTCTAACTCCAACTACATCAAAGAGAGGATATTGAGATGGTTGACTGATGAGGAGGAACAAACTAAGAAGACTTATTCAACAAAAACTCAGTTTTTGATTGTTGAGATGTCTCCTGTTACCGACATCGACACTAGTGGCATTCATGCCTTGGAAGAGCTATACGGTAATCTCCAGAAAAGAGACATTCAGCTTATTTTGGCAAACCCTGGGCCAGTAGTGATTGAAAAACTTCACGCATCCAAACTCGCGAATCTGATTGGTGAAGACCATATCTTTCTGACGGTTGCTGAAGCTGTTTCGTCCTGCTCCCCAAAGTTGGTGGAAGAGGCCTAG 1977 42.54 MDSRGHSNGGELETKEMDITSLSSSRNNSQFIHKVGVPPKQNLFKEFTATVKETFFSDDPLRTFKDQSKSRKFVLGIQAVFPIFEWGRNYNLTKFRGDLIAGFTIASLCIPQDIGYANLANLAPQYGLYSSFVPPLVYALMGSSRDIAIGPVAVVSLLLGTLLQKEIDYHTHPEEYLRLAFTATFFAGITQATLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKKFTKKTDIISVMRSVFAAAHHGWNWQTIVLGVAFLSFLLFAKYIGKKNKSLFWVPAIAPLISVILSTFFVYITHADEKGVAIVKHIEKGINPSSVKQIYFTGDNLLKGFRIGIVAGMIALTEATAIGRTFASMKDYQLDGNKEMVALGTMNVIGSMTSCYVATGSFSRSAVNYMSGCQTAVSNIVMSCVVFLTLEFITPLFKYTPNAILAVIIISAVINLIDIQAAILLWKIDKFDFVACLGAFFGVIFASVEIGLLIAVSISFAKILLQVTRPRVAVLGKIPRTTVYRNTQQYPEATRVPGVLIVRVDSAIYFSNSNYIKERILRWLTDEEEQTKKTYSTKTQFLIVEMSPVTDIDTSGIHALEELYGNLQKRDIQLILANPGPVVIEKLHASKLANLIGEDHIFLTVAEAVSSCSPKLVEEA 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5181786 5189445 - Sed0025826.1 Sed03g0853 706340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0853 658 Pfam STAS domain 528 646 IPR002645 -
Sed03g0853 658 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Sed03g0853 658 CDD STAS_SulP_like_sulfate_transporter 528 643 - -
Sed03g0853 658 ProSiteProfiles STAS domain profile. 527 650 IPR002645 -
Sed03g0853 658 Gene3D STAS domain 507 653 IPR036513 -
Sed03g0853 658 FunFam Sulfate transporter 31 507 653 - -
Sed03g0853 658 Pfam Sulfate permease family 95 475 IPR011547 GO:0016020(InterPro)
Sed03g0853 658 PANTHER SULFATE TRANSPORTER 56 650 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g0853 658 NCBIfam sulfate permease 82 646 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g0853 658 SUPERFAMILY SpoIIaa-like 529 651 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2777 Sed-Chr1:22971448 Sed03g0853 Sed-Chr3:5181786 8.80E-84 dispersed
Sed03g0060 Sed-Chr3:356293 Sed03g0853 Sed-Chr3:5181786 1.80E-105 dispersed
Sed03g0853 Sed-Chr3:5181786 Sed12g1415 Sed-Chr12:11758550 1.40E-296 dispersed
Sed03g0853 Sed-Chr3:5181786 Sed03g0854 Sed-Chr3:5181786 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0853 K17470 - csv:101212138 1199.88