Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0855 ATGGGTTCTTTGCCCTCTGATACTTTGGCCGTCGAAATGGCCGACGCCCATATTCTCGCCGGCGCCGGAACTCAGACCACCACAGACTGGCTTCTCAACTCTCCCAACCCTCCAACTTTCTGGGAACAACTCGCCGGCGCCGTCAAACAAAATGTCATTCCACAAAGCTGCACAAAAACCCACATCGCTAAAAAGAAGAAAACCCCCACTTCTTCTTCTTCTTCAACCTCCCAAAAACAGAGCATTTTCAAAACCACTGGTTTTCTTCTGCAAAAAGTGTTCCCAATTCTCAGATTAGCCCCACATTACAAAGCTTCCAAGTTCAAAAACGACCTCATGGCTGGTTTAACCCTCGCCAGTCTCAGCATCCCCCAGAGTATTGGGTATGCGAATTTGGCTAAGCTTGACCCTCAGTTTGGTCTCTATACAAGTGCTGTTCCTCCATTAATCTATGCGTTCATGGGGAGTTCAAGAGAGATAGCCATTGGGCCAGTGGCTGTGGTTTCGCTGCTTCTTTCGTCTATGCTTCAAGAAATTCAAGATCCTATTGCAGACCCAGTTGGTTACAGAAGGCTTGTTTTTACTGTCACTTTCTTTGCAGGGATTTTCCAAGCAGCATTTGGGCTTTTGAGGTTGGGATTTCTTGTGGATTTTCTTTCCCATGCTGCCATTGTTGGCTTCATGGCTGGTGCTGCCATTCTCATTGGTCTTCAGCAAATGAAGGGCTTACTTGCCATTACCAATTTCACTACTAAAACTGATGTGGTTTCTGTCATGGAGTCTATTGTCAAATCTGTTCACCAGACTTGGTACCCTTTGAACATTGTACTTGGCTGTTCTTTCCTGATCTTTCTTCTTGTGGCAAGGTTTATTGGCAGGAGAAAAAAGAAGCTCTTTTGGGTGTCAGCAATTGCTCCTCTCATATCTGTTGTTCTGTCCACTGTGATAGTGTTTGTATCAAGAGCTGATAAACATGGAGTTAAGATTGTGAAGGAAGTTAAAGAAGGTTTGAATCCAATCTCCATTCATCAGCTGCAATTGAACGCCTCAACTGTTGGCTTAGCTGCCAAAGCTGGCCTCATTTCTGCCATTATAGCTCTCACAGAAGCGATCGCGGTCGGCCGATCCTTCGCCTCGATTAAAGGCTATAACATTGATGGGAACAGGGAGATGGTTGCCATGGGCTTCATGAATATTATAGGTTCTCTAACCTCTTGCTACATAGCCACTGGGTCATTCTCAAGAACAGCAGTGAATTTTAGTGCTGGATGTGAGAGTGTGTTATCAAATATAGTGATGGCAGTAACAGTGATGTTGACACTGCAATTCTTCACAAGGTTCCTCTACTTCACTCCAATGCCCATTTTGGCTTCCATCATTCTCTCTGCTCTTCCTGGTCTCATTGACATCAATGAAGCTATCCATATCTGGAAGGTTGACAAGCTCGACTTTCTTGCCTGTCTTGCCGCTTTCCTCGGTGTCTTATTTCATTCCGTCGAATTTGGCCTTCTTCTTGCGGTTGGAATTTCATTTGCAAAGATATTGTTGATTTCAATTCGACCAGCCACAGAGGAAGTTGGAAGGCTTCCAAGAAGTGATATGTTTTGCAATATGAAGCAATTCCCAATGGCCATCAAAACTCAAGGAATCTCCATTCTCAGAATCAACTCTGCCATGCTTTGTTTTGCCAATGCCACTTTCATCAGAGACAGGATAATGAAATTGGTTGAAGAAGATGAAGACGATGATGTTGAAGAAACAACAAAAGGTCAACCTAAACAAGTAGTTGTTGATTTTTGCAACGTTATGAATATCGACACATCAGGAATCATTGCTTTAGAGGAACTTCACACAAAGTTGTTGTTGCATGGTATACAAGTGACAATAGCCAGTCCAAAATGGGAAGTGATCCATAAACTAAAAAAAACCAATTTTGTTGAAAGAATTGAAGGAAGAGTTTTCCTATCAGTTGGTGAAGCTGTGGATTCATGCCTTGGAAATGCATCCAAATTGCCTTGA 2019 43.24 MGSLPSDTLAVEMADAHILAGAGTQTTTDWLLNSPNPPTFWEQLAGAVKQNVIPQSCTKTHIAKKKKTPTSSSSSTSQKQSIFKTTGFLLQKVFPILRLAPHYKASKFKNDLMAGLTLASLSIPQSIGYANLAKLDPQFGLYTSAVPPLIYAFMGSSREIAIGPVAVVSLLLSSMLQEIQDPIADPVGYRRLVFTVTFFAGIFQAAFGLLRLGFLVDFLSHAAIVGFMAGAAILIGLQQMKGLLAITNFTTKTDVVSVMESIVKSVHQTWYPLNIVLGCSFLIFLLVARFIGRRKKKLFWVSAIAPLISVVLSTVIVFVSRADKHGVKIVKEVKEGLNPISIHQLQLNASTVGLAAKAGLISAIIALTEAIAVGRSFASIKGYNIDGNREMVAMGFMNIIGSLTSCYIATGSFSRTAVNFSAGCESVLSNIVMAVTVMLTLQFFTRFLYFTPMPILASIILSALPGLIDINEAIHIWKVDKLDFLACLAAFLGVLFHSVEFGLLLAVGISFAKILLISIRPATEEVGRLPRSDMFCNMKQFPMAIKTQGISILRINSAMLCFANATFIRDRIMKLVEEDEDDDVEETTKGQPKQVVVDFCNVMNIDTSGIIALEELHTKLLLHGIQVTIASPKWEVIHKLKKTNFVERIEGRVFLSVGEAVDSCLGNASKLP 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5208725 5216937 + Sed0025741.1 Sed03g0855 706342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0855 672 Pfam STAS domain 543 660 IPR002645 -
Sed03g0855 672 ProSitePatterns SLC26A transporters signature. 137 158 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Sed03g0855 672 PANTHER SULFATE TRANSPORTER 76 665 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g0855 672 CDD STAS_SulP_like_sulfate_transporter 541 655 - -
Sed03g0855 672 ProSiteProfiles STAS domain profile. 560 664 IPR002645 -
Sed03g0855 672 SUPERFAMILY SpoIIaa-like 547 664 IPR036513 -
Sed03g0855 672 Pfam Sulfate permease family 108 489 IPR011547 GO:0016020(InterPro)
Sed03g0855 672 NCBIfam sulfate permease 95 657 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g0855 672 Gene3D STAS domain 520 667 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0855 Sed-Chr3:5208725 Sed07g1733 Sed-Chr7:16184139 8.00E-215 dispersed
Sed03g0854 Sed-Chr3:5181786 Sed03g0855 Sed-Chr3:5208725 3.20E-168 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0855 K17469 - csv:101211892 1089.72