Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g0864 | ATGGCCGGAAGCCGCCGGTCGGGTTCCGGCGAGGAGGAGTTCAAGGTGGAGAGCGTTTGCGAGCGGATGTCGTCGTCGCGAGGGAGCCGGTTCGATCTGATTCAGAAGCAGTTGGGGATTGACGATCGTGATGGGGCGAGCACTGGCAGCAGATTTAGCCGCCAAAATCTCATTAATGGCTTTAAATGTCTCCTCATTCTCCCTGACACCAGATGGTATAGGGCGTGGACGAAGTTCATACTGATATGGGCAATCTACTCTTCCTTCTTCACACCAATGGAATTTGGATTCTTCAGGGGATTACCAGAGAATCTCTTTATACTCGACATCGTCGGACAGCTTGCTTTCCTTCTTGACATTGTTTTCCAGTTCTTCCTTGCCTACAGAGACAGTCAGACATACCGAATGGTCTATAAGCGCAATCCGATCGCACTCAAGTACTTGAAATCCACTTTTGTGACTGATTTGCTTAGTTGTATGCCTTGGGATATCATTTATAAGGCTTGTGGGAAGAGAGAGGAGGTGAGATACCTTCTATGGATAAGGTTATTCCGGGTGCGGAAAGTCACTGATTTTTTTCAGACGTTGGAGAAGGATATCCGTATAAATTATATGTTCACTAGAATTGTCAAGCTCCTTGTTGTTGAACTTTACTGCACACATACTGCAGCCTGCATCTTTTACTATTTGGCAACAACTCTTCCTCCTTCTCAAGAAGGGTACACATGGATTGGAAGCTTAAAATTGGGAGATTACAGTTACTCAGATTTCAGAGATATCGATTTATGGAAACGCTACACCACATCCTTATACTTCGCTATTGTCACCATGGCCACTGTTGGTTATGGAGATATACATGCAGTCAACTTGAGGGAAATGATATTCGTAATGATTTATGTGTCATTTGACATGGTTCTCGGTGCTTACTTGATAGGTAACATGACTGCATTGATTGTAAAAGGATCAAAGACGGTGAAATTCAGGGACAAAATGACAGATGTAATGAAATACATGAACAGAAATAGACTTGGCAGGGATATCCGTGATCAGATCAAAGGTCACTTACGTTTACAGTATGAAAGTAGCTACACTGAGGCTGCTGTTCTACAAGACATCCCAATATCAATCCGTGCTAAGATTTCCCAAACATTATACTTGACATATATTGAGAATGTTTCTCTCTTTAGAGGATGCTCTCCAGAGTTCATCAATCAGATTGTTATTAGACTCCACGAAGAGTTTTTTCTACCTGGAGAGGTGATAATGGAACAAGGAAATGTAGTTGATCAACTTTATTTTGTCTGCCATGGGGTGCTGGAGGAAGTAGGCATAGGACAAGATGGTCAGGAAGAGACAATATCTTTACTACAGCCCAACAGCTCTTTCGGAGAGATATCAATTCTTTGCAATATTCCTCAACCTTATACAGTTCGAGTCTGTGAATTGTGTAGGCTCTTGCGCCTTGATAAACAGTCCTTTACAAATATCCTTGACATATACTTTTACGACGGGAGGAAAATCTTGAACAACCTTCTAGAGGGAAAGAAATCAAACCTTCGAGTTAAGCAATTGGAGTCAGATATCACCTTTCATATTGGTAAACAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATCATGGAGATCTATTCCAATTAAAAGGTCTAGTTCGAGCTGGAGCTGATCCGAGGAAGACAGATTATGATGGAAGGTCACCTTTGCATCTTGCAGCATCAAGAGGATTCGAGGATATAGTTTCTTTCCTTATTCAGGAAGGAGTGAACATTGATCTTAAAGATAATTTTGGCAATACTCCATTGATGGAAGCCATCAAGAATGGGAACGATCAAGTTGCTGTTTTGCTTTCTAAAGAAGGTGCCTCGTTGAAGGTGGAGAATGCTGGTAGCTTCCTCTGTACAGCAGTTTCAAGGGGTGATTCAGATCTTGTTAAGAGATTATTGTGCTATGGCATCGACCCCAACGCCAAAGATTACGATTTCCGAACTCCATTACATATAGCTGCCTCAGAAGGGCTACAATTGATGGCAAAGTTGCTTTTGGAATCTGGGGCCAGTGTTTTCTCAAAGGACAGATGGGGAAACACCCCGCTTGATGAAGGCCGGATTTGTGGAAACAAAAGTTTGCTTAAGCTCTTGGAAGAGGCAAAAGCTGCCCAGTTGTCAGAATCCCCTTATTCCTCTCGAGAATTCTCAGTAAAAAAGCACTCAAAGAAATGTACAGTATTCCCCTACCACCCATGGGATCCCAAAGAAAACAGAAGACCTGGAATTGTGCTATGGGTTCCACTCACTATTGAAGAGCTCATAGAAGTGTCATCAGAGAAGCTACAAGTTTCAGACAAATGTTGTATATTATCAGAAGATGGAGGTAAAATTATTGATGTTCATATGGTTGATGAATGTCAGAAGCTGTATCTAGTTCCTGAAACTCATTAG | 2463 | 42.18 | MAGSRRSGSGEEEFKVESVCERMSSSRGSRFDLIQKQLGIDDRDGASTGSRFSRQNLINGFKCLLILPDTRWYRAWTKFILIWAIYSSFFTPMEFGFFRGLPENLFILDIVGQLAFLLDIVFQFFLAYRDSQTYRMVYKRNPIALKYLKSTFVTDLLSCMPWDIIYKACGKREEVRYLLWIRLFRVRKVTDFFQTLEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPPSQEGYTWIGSLKLGDYSYSDFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMTDVMKYMNRNRLGRDIRDQIKGHLRLQYESSYTEAAVLQDIPISIRAKISQTLYLTYIENVSLFRGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIGQDGQEETISLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGKKSNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLFQLKGLVRAGADPRKTDYDGRSPLHLAASRGFEDIVSFLIQEGVNIDLKDNFGNTPLMEAIKNGNDQVAVLLSKEGASLKVENAGSFLCTAVSRGDSDLVKRLLCYGIDPNAKDYDFRTPLHIAASEGLQLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKSLLKLLEEAKAAQLSESPYSSREFSVKKHSKKCTVFPYHPWDPKENRRPGIVLWVPLTIEELIEVSSEKLQVSDKCCILSEDGGKIIDVHMVDECQKLYLVPETH | 820 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 5264391 | 5273575 | - | Sed0005578.1 | Sed03g0864 | 706351 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g0864 | 820 | Pfam | Ankyrin repeats (3 copies) | 640 | 721 | IPR002110 | GO:0005515(InterPro) | |
| Sed03g0864 | 820 | Pfam | Ankyrin repeats (3 copies) | 546 | 633 | IPR002110 | GO:0005515(InterPro) | |
| Sed03g0864 | 820 | PRINTS | Ankyrin repeat signature | 684 | 698 | IPR002110 | GO:0005515(InterPro) | |
| Sed03g0864 | 820 | PRINTS | Ankyrin repeat signature | 572 | 587 | IPR002110 | GO:0005515(InterPro) | |
| Sed03g0864 | 820 | Gene3D | - | 637 | 733 | IPR036770 | - | |
| Sed03g0864 | 820 | ProSiteProfiles | Ankyrin repeat region circular profile. | 571 | 603 | - | - | |
| Sed03g0864 | 820 | FunFam | Potassium channel SKOR | 74 | 319 | - | - | |
| Sed03g0864 | 820 | ProSiteProfiles | Ankyrin repeat profile. | 668 | 700 | IPR002110 | GO:0005515(InterPro) | |
| Sed03g0864 | 820 | ProSiteProfiles | Ankyrin repeat region circular profile. | 668 | 700 | - | - | |
| Sed03g0864 | 820 | Gene3D | Helix hairpin bin | 321 | 377 | - | - | |
| Sed03g0864 | 820 | CDD | CAP_ED | 394 | 508 | IPR000595 | - | |
| Sed03g0864 | 820 | ProSiteProfiles | Ankyrin repeat profile. | 635 | 667 | IPR002110 | GO:0005515(InterPro) | |
| Sed03g0864 | 820 | PRINTS | EAG/ELK/ERG potassium channel family signature | 266 | 283 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed03g0864 | 820 | PRINTS | EAG/ELK/ERG potassium channel family signature | 109 | 119 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed03g0864 | 820 | PRINTS | EAG/ELK/ERG potassium channel family signature | 218 | 228 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed03g0864 | 820 | PRINTS | EAG/ELK/ERG potassium channel family signature | 310 | 319 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed03g0864 | 820 | PANTHER | POTASSIUM CHANNEL AKT1 | 30 | 815 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Sed03g0864 | 820 | Pfam | KHA, dimerisation domain of potassium ion channel | 746 | 815 | IPR021789 | - | |
| Sed03g0864 | 820 | SUPERFAMILY | cAMP-binding domain-like | 322 | 512 | IPR018490 | - | |
| Sed03g0864 | 820 | SUPERFAMILY | Voltage-gated potassium channels | 68 | 319 | - | - | |
| Sed03g0864 | 820 | ProSiteProfiles | Ankyrin repeat region circular profile. | 604 | 635 | - | - | |
| Sed03g0864 | 820 | ProSiteProfiles | Ankyrin repeat profile. | 571 | 603 | IPR002110 | GO:0005515(InterPro) | |
| Sed03g0864 | 820 | ProSiteProfiles | KHA domain profile. | 747 | 820 | IPR021789 | - | |
| Sed03g0864 | 820 | ProSiteProfiles | Ankyrin repeat profile. | 604 | 636 | IPR002110 | GO:0005515(InterPro) | |
| Sed03g0864 | 820 | Gene3D | Jelly Rolls | 378 | 518 | IPR014710 | - | |
| Sed03g0864 | 820 | SMART | cnmp_10 | 394 | 512 | IPR000595 | - | |
| Sed03g0864 | 820 | FunFam | Potassium channel KAT2 | 382 | 519 | - | - | |
| Sed03g0864 | 820 | Pfam | Cyclic nucleotide-binding domain | 414 | 498 | IPR000595 | - | |
| Sed03g0864 | 820 | SUPERFAMILY | Ankyrin repeat | 543 | 723 | IPR036770 | - | |
| Sed03g0864 | 820 | Gene3D | - | 528 | 636 | IPR036770 | - | |
| Sed03g0864 | 820 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 394 | 514 | IPR000595 | - | |
| Sed03g0864 | 820 | Pfam | Ion transport protein | 73 | 321 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed03g0864 | 820 | Gene3D | - | 76 | 320 | - | - | |
| Sed03g0864 | 820 | SMART | ANK_2a | 701 | 731 | IPR002110 | GO:0005515(InterPro) | |
| Sed03g0864 | 820 | SMART | ANK_2a | 571 | 600 | IPR002110 | GO:0005515(InterPro) | |
| Sed03g0864 | 820 | SMART | ANK_2a | 668 | 697 | IPR002110 | GO:0005515(InterPro) | |
| Sed03g0864 | 820 | SMART | ANK_2a | 604 | 633 | IPR002110 | GO:0005515(InterPro) | |
| Sed03g0864 | 820 | SMART | ANK_2a | 635 | 664 | IPR002110 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g0864 | Sed-Chr3:5264391 | Sed12g2387 | Sed-Chr12:33723683 | 1.50E-85 | dispersed | |
| Sed01g3013 | Sed-Chr1:31888211 | Sed03g0864 | Sed-Chr3:5264391 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g0864 | K21867 | - | csv:101210912 | 1469.14 |