Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0881 | ATGGCACTTGCAAACTCATTTGTACAAGAAATGGATGGAAGCCATGAGAATCCAAATGCTAATTTTGATCATCATCATCATCAAAATCAGCTGCAAATGTCTCAATCTCTCATAAACTTCAAATGTGGGATTGAGAATAATAATCCTTTCCATAAGAATAATATAAATGAATCAGAATCATTGCTGAGCTTTGAGCCACAAGGGGTTTGTCAATTAGGGCCTTACACTTGGGATCAGCAGCAGCGTTTGATGGACGATCCCAATTGCTTTCAAACAGCTACTAATAATTACAGCATTTCAAAACACAACAAAAATGGAGATGGGTCTGTGTTTGAGTGGCTCTATTCTGAGGTACCTGTTGTTTCTGATCTCGATCATGACGATGAACCAGCTCGGGAATTTCGTGATCAAAAGCGACCCCATTCGGGAGAAAGCAGTGGTGGTATTTGCAAGAAGCAATGTAGTGATACAACTAAAAAACAGAAACCAAAATCATCAACAGCCAATAATAAGGATCCTCAGAGCATTGCAGCCAAGAATCGACGAGAGAGGATTAGCGAGCGCCTGAAGATGCTCCAAGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGTTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCGACTGATGAATTTTGGCCCGCTCAAGATGGGAAAGTTCCGGATATTTCCCAAGTTAAGGAAGCCATTGATGCCATTCTTTTATCTCAAAGAGAAAGAAGCTCAAGCTCCAACAGTGAAAAGTGA | 801 | 40.45 | MALANSFVQEMDGSHENPNANFDHHHHQNQLQMSQSLINFKCGIENNNPFHKNNINESESLLSFEPQGVCQLGPYTWDQQQRLMDDPNCFQTATNNYSISKHNKNGDGSVFEWLYSEVPVVSDLDHDDEPAREFRDQKRPHSGESSGGICKKQCSDTTKKQKPKSSTANNKDPQSIAAKNRRERISERLKMLQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPAQDGKVPDISQVKEAIDAILLSQRERSSSSNSEK | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5449890 | 5452056 | + | Sed0027125.1 | Sed03g0881 | 706368 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0881 | 266 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Sed03g0881 | 266 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 169 | 218 | IPR011598 | GO:0046983(InterPro) | |
Sed03g0881 | 266 | SMART | finulus | 175 | 224 | IPR011598 | GO:0046983(InterPro) | |
Sed03g0881 | 266 | CDD | bHLH_AtIND_like | 171 | 232 | - | - | |
Sed03g0881 | 266 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 21 | 231 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0881 | 266 | MobiDBLite | consensus disorder prediction | 129 | 179 | - | - | |
Sed03g0881 | 266 | Pfam | Helix-loop-helix DNA-binding domain | 177 | 219 | IPR011598 | GO:0046983(InterPro) | |
Sed03g0881 | 266 | FunFam | Transcription factor bHLH83 | 167 | 226 | - | - | |
Sed03g0881 | 266 | MobiDBLite | consensus disorder prediction | 148 | 175 | - | - | |
Sed03g0881 | 266 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 169 | 228 | IPR036638 | GO:0046983(InterPro) | |
Sed03g0881 | 266 | Gene3D | - | 164 | 226 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0881 | Sed-Chr3:5449890 | Sed07g1264 | Sed-Chr7:9507937 | 1.90E-18 | dispersed | |
Sed08g2819 | Sed-Chr8:39576820 | Sed03g0881 | Sed-Chr3:5449890 | 4.20E-09 | transposed | |
Sed01g3002 | Sed-Chr1:30253436 | Sed03g0881 | Sed-Chr3:5449890 | 2.30E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37782 | PF00010 | HLH | 1.30E-07 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0881 | - | - | - | 0.0 |