Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0881 ATGGCACTTGCAAACTCATTTGTACAAGAAATGGATGGAAGCCATGAGAATCCAAATGCTAATTTTGATCATCATCATCATCAAAATCAGCTGCAAATGTCTCAATCTCTCATAAACTTCAAATGTGGGATTGAGAATAATAATCCTTTCCATAAGAATAATATAAATGAATCAGAATCATTGCTGAGCTTTGAGCCACAAGGGGTTTGTCAATTAGGGCCTTACACTTGGGATCAGCAGCAGCGTTTGATGGACGATCCCAATTGCTTTCAAACAGCTACTAATAATTACAGCATTTCAAAACACAACAAAAATGGAGATGGGTCTGTGTTTGAGTGGCTCTATTCTGAGGTACCTGTTGTTTCTGATCTCGATCATGACGATGAACCAGCTCGGGAATTTCGTGATCAAAAGCGACCCCATTCGGGAGAAAGCAGTGGTGGTATTTGCAAGAAGCAATGTAGTGATACAACTAAAAAACAGAAACCAAAATCATCAACAGCCAATAATAAGGATCCTCAGAGCATTGCAGCCAAGAATCGACGAGAGAGGATTAGCGAGCGCCTGAAGATGCTCCAAGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGTTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCGACTGATGAATTTTGGCCCGCTCAAGATGGGAAAGTTCCGGATATTTCCCAAGTTAAGGAAGCCATTGATGCCATTCTTTTATCTCAAAGAGAAAGAAGCTCAAGCTCCAACAGTGAAAAGTGA 801 40.45 MALANSFVQEMDGSHENPNANFDHHHHQNQLQMSQSLINFKCGIENNNPFHKNNINESESLLSFEPQGVCQLGPYTWDQQQRLMDDPNCFQTATNNYSISKHNKNGDGSVFEWLYSEVPVVSDLDHDDEPAREFRDQKRPHSGESSGGICKKQCSDTTKKQKPKSSTANNKDPQSIAAKNRRERISERLKMLQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPAQDGKVPDISQVKEAIDAILLSQRERSSSSNSEK 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5449890 5452056 + Sed0027125.1 Sed03g0881 706368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0881 266 MobiDBLite consensus disorder prediction 1 26 - -
Sed03g0881 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983(InterPro)
Sed03g0881 266 SMART finulus 175 224 IPR011598 GO:0046983(InterPro)
Sed03g0881 266 CDD bHLH_AtIND_like 171 232 - -
Sed03g0881 266 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 21 231 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0881 266 MobiDBLite consensus disorder prediction 129 179 - -
Sed03g0881 266 Pfam Helix-loop-helix DNA-binding domain 177 219 IPR011598 GO:0046983(InterPro)
Sed03g0881 266 FunFam Transcription factor bHLH83 167 226 - -
Sed03g0881 266 MobiDBLite consensus disorder prediction 148 175 - -
Sed03g0881 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 228 IPR036638 GO:0046983(InterPro)
Sed03g0881 266 Gene3D - 164 226 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0881 Sed-Chr3:5449890 Sed07g1264 Sed-Chr7:9507937 1.90E-18 dispersed
Sed08g2819 Sed-Chr8:39576820 Sed03g0881 Sed-Chr3:5449890 4.20E-09 transposed
Sed01g3002 Sed-Chr1:30253436 Sed03g0881 Sed-Chr3:5449890 2.30E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37782 PF00010 HLH 1.30E-07 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0881 - - - 0.0