Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0894 ATGAAATTGGAAGAGAATGAGCATTCGCTGGTCAATCGCATCGGGAGCACTCAACAGGAAGCAATTTCTTATTTGGAAGAAGAGCTCAGGTTCTTTCTCGAGGGCGATGCGGAACCTGCACCGGATCGTTGTGTATTACCTGAACCTGAATCCGATCAACTCCAATTTCCAGGTTACTCCGACGAGATCGTGAGCTATTTGAACAAAATCGTCAACCAAATGATTTCCAGTGGATACGAATCAGAATGTTGCCAAGTTTACATCGTCGCAAGAAGAAACATATTCGAAGGAGCCTTGCAGAAGCTCGGATTCGAGAAATACAGCATCGATGATATACAGAAGATGAGTTGGGAATCAATGGAGAAAGAGATCGCTACATGGATCCAAATCTTCAAGCAATGCGCTGCCGTTTTGTTCCCCGGCGAACGGAATCTCGCCGGATCTATATTTTCAGCATATCCTCCGATCTCCGCTAGCCTGTTTGGCAATCTAACTCGCGGAATTGTAATTCAATTGCTGAATTTCTCAGAAGGAGTCGCAATGACGAAACGCTCCGCAGAGAAATTGTTCAAGATGCTCGACATGTACGAAGCTCTTCGAGATACGGTTCCAACAATGGAAAACCTATTTCCAGAAGAATCCGTCAACGAACTCAAACTAGAGACCGCAACCGCTCGAACTCGCCTAGGCGAAGCGGCGATTTGCATATTCTGCGATCTGGAAAACTCGATCAAAGCCGACACCGGAAAAACTCCAGTACCCGGCGGCGCCGTGCATCCATTGACTCGATACACCATAAACTACTTGAAATACGCCTGCGAGTACAGAAACACACTGGAACAGATTTTCAAAGAACACGCAAGGATCGAAAGAGCCGATTCAACAAGCAGACCGCATCACGAAGGCGAAGGATCGCCAAATTACAACCCTAGCGCCGCTGGCGCAGACAATCAATCACTCTTCTCGGTAGAACTGAAGAAGATAATGGAGCTCCTGGACTCGAATCTGGAAGCGAAATCAAAGCTATACAAAGACATAGCCCTAAGTTCGATTTTCATGATGAACAACGGGCGATACATTTTACAAAAAATCAAAGGATCTGCAGACATTCACGAACTAGTAGGCGATAATTGGTACCGGAAGAGATCTTCAGATCTCCGCCAGTACCACAAGAGTTACCAGAGAGAAACCTGGGGAAGATTGCTAGGTTGCTTGAACCACGAAGGATTAACAGTACACGGGAAAGTAGTAAAGCCAGTGCTGAAAGAGAAATTTAAAGCATTCAATACCTTGTTCGAAGAGATTCACAAGACGCAAAGCTCGTGGATCATAAGCGACGAACAGCTTCAATCGGAGCTCCGAGTATCGATATCGGCGGTGATGATTCCGGCGTACAGGTCGTTCCTGGCTAGGTTTTCGCAGTACTTAGATCCGGGGAGACAAACGGAGAAATACATTAAGCTTCAGCCGGAAGACATTGAAACCTACATTGATGATTTGTTCGATGGAAATCCATCCTCCATGGCAAGAAAACGATGA 1539 46.0 MKLEENEHSLVNRIGSTQQEAISYLEEELRFFLEGDAEPAPDRCVLPEPESDQLQFPGYSDEIVSYLNKIVNQMISSGYESECCQVYIVARRNIFEGALQKLGFEKYSIDDIQKMSWESMEKEIATWIQIFKQCAAVLFPGERNLAGSIFSAYPPISASLFGNLTRGIVIQLLNFSEGVAMTKRSAEKLFKMLDMYEALRDTVPTMENLFPEESVNELKLETATARTRLGEAAICIFCDLENSIKADTGKTPVPGGAVHPLTRYTINYLKYACEYRNTLEQIFKEHARIERADSTSRPHHEGEGSPNYNPSAAGADNQSLFSVELKKIMELLDSNLEAKSKLYKDIALSSIFMMNNGRYILQKIKGSADIHELVGDNWYRKRSSDLRQYHKSYQRETWGRLLGCLNHEGLTVHGKVVKPVLKEKFKAFNTLFEEIHKTQSSWIISDEQLQSELRVSISAVMIPAYRSFLARFSQYLDPGRQTEKYIKLQPEDIETYIDDLFDGNPSSMARKR 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5548698 5550236 + Sed0000464.1 Sed03g0894 706381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0894 512 Pfam Exo70 exocyst complex subunit C-terminal 126 499 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed03g0894 512 SUPERFAMILY Cullin repeat-like 7 502 IPR016159 -
Sed03g0894 512 FunFam Exocyst subunit Exo70 family protein 1 509 - -
Sed03g0894 512 MobiDBLite consensus disorder prediction 290 313 - -
Sed03g0894 512 PANTHER EXOCYST COMPLEX PROTEIN EXO70 8 504 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed03g0894 512 Gene3D Exocyst complex component Exo70 1 511 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1010 Sed-Chr2:47485737 Sed03g0894 Sed-Chr3:5548698 1.10E-150 dispersed
Sed03g0894 Sed-Chr3:5548698 Sed06g0018 Sed-Chr6:141779 4.10E-86 dispersed
Sed01g2974 Sed-Chr1:27006421 Sed03g0894 Sed-Chr3:5548698 2.80E-236 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0894 K07195 - csv:101206040 890.567