Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0897 ATGGTTCTCTCCAAAACCGCTTCTCAGACTGATGTCTCCGTCCACTCCACCTTCGCTTCTCGATACGTCCGAACTCCGCTCCCGAGATTCAAAATGCCGGAAAACTCGATCCCTAAGGAGGCTGCGTTTCAGATCATTAACGATGAGCTGATGCTGGATGGAAACCCTAGGCTGAATTTGGCCTCCTTCGTCACCACTTGGATGGAGCCTGAGTGCGATAAACTCATTATGGCTTCCATTAACAAGAATTACGTCGATATGGATGAGTATCCTGTCACTACAGAGCTTCAGAATCGATGTGTGAACATGATAGCTCACTTGTTCAATGCCCCATTGGGCGATGGTGAGACGGCGGTGGGAGTTGGAACGGTTGGATCGTCGGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAGTGGCAGAATCGAAGGAAGGCTGAAGGCAAGCCCTTCGACAACCCCAACATTGTCACTGGAGCTAATGTCCAGGTATGCTGGGAGAAATTCGCAAGGTACTTCGAGGTAGAACTGAAGGAGGTGAAATTGAAGGAAGGTTACTATGTGATGGATCCAGAGAAAGCTGTGGAGTTGGTTGATGAAAACACAATCTGTGTTGCAGCCATCTTGGGTTCCACTCTCAATGGAGAATTCGAAGACGTAAAACTCTTAAATGATCTCTTAGTCGAGAAGAACAGCCAAACTGGATGGGACACTCCTATTCATGTGGATGCTGCTAGTGGAGGGTTCATTGCCCCATTCATTTACCCTGAGCTAGAGTGGGACTTTAGGCTACCCCTTGTGAAGAGTATTAATGTGAGTGGTCATAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGTCATCTGGAGGAACAAGGAAGACTTGCCTGATGAACTCATCTTCCATATCAATTATCTTGGGGCTGACCAACCAACTTTCACCCTCAATTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAGTACTACCAATTGATCCGCTTGGGTTATGAGGGATACCAAAATGTGATGGAAAACTGCAGAGAAAACATGATCGTCCTCAAGGAAGGGCTGGAAAATACAGGGCGGTTCAACATTGTGTCAAAGGACAATGGAGTTCCACTGGTGGCCTTCTCCTTGAAAGACAACACTCGCCACACGGAGTTTGAAGTCTCAGAAATGCTCAGGAGATTCGGCTGGATCGTCCCGGCCTACACCATGCCTCCTGATGCACAACACGTTACGGTTCTAAGAGTGGTCATCCGAGAAGATTTCTCTCGCACCCTTGCTGAGCGCCTTGTCAATGACATTGAAAAAACGCTGCACGAGCTCGACAGCCTCCCATCGAGGGCCGATATCAAAACGACAGTGGCTGGAGAAGAGACGGACGGCAACAACGTCGTGGTGGCGAAGAAGAGTGCGCTCGAGATGCAGAGGGAGATCACCACTGTGTGGAGGAAGTTTGTGATGGAGAAGAAGAGAACTAATGGAGTTTGTTAG 1500 48.33 MVLSKTASQTDVSVHSTFASRYVRTPLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDGETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPFDNPNIVTGANVQVCWEKFARYFEVELKEVKLKEGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNSQTGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCRENMIVLKEGLENTGRFNIVSKDNGVPLVAFSLKDNTRHTEFEVSEMLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVNDIEKTLHELDSLPSRADIKTTVAGEETDGNNVVVAKKSALEMQREITTVWRKFVMEKKRTNGVC 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5565001 5573414 - Sed0010889.1 Sed03g0897 706384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0897 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Sed03g0897 499 FunFam Glutamate decarboxylase 1 65 - -
Sed03g0897 499 Gene3D - 361 448 - -
Sed03g0897 499 CDD DOPA_deC_like 59 439 - -
Sed03g0897 499 FunFam Glutamate decarboxylase 66 360 - -
Sed03g0897 499 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Sed03g0897 499 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Sed03g0897 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Sed03g0897 499 Gene3D - 1 65 - -
Sed03g0897 499 FunFam Glutamate decarboxylase 361 448 - -
Sed03g0897 499 Gene3D - 66 360 IPR015421 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2970 Sed-Chr1:26932498 Sed03g0897 Sed-Chr3:5565001 1.60E-265 dispersed
Sed03g0897 Sed-Chr3:5565001 Sed03g1065 Sed-Chr3:6465532 2.50E-237 dispersed
Sed08g2018 Sed-Chr8:34467889 Sed03g0897 Sed-Chr3:5565001 3.00E-227 transposed
Sed01g2969 Sed-Chr1:26932498 Sed03g0897 Sed-Chr3:5565001 6.90E-281 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0897 K01580 - csv:101216119 969.533