Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0925 ATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCTTGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGTCCCCTTGTGTCCCTCCCAAGTGCTGGAACTCGGGTTGTTTACTTTCCTCAGGGTCACAGCGAACAGGTTGCTGCCACAACCAACAAAGAGGTTGATGGGCATATGCCCAATTACCCGAACCTGCCACCTCAGTTGATATGTCAACTCCATAACGTTACAATGCATGCAGATGTGGAAACGGATGAAGTATATGCTCAAATGACATTACAGCCGCTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCGAGTAGACAGCCAACAAATTACTTTTGCAAGACATTGACAGCAAGTGATACAAGCACCCATGGAGGATTCTCTGTACCTCGTCGTGCTGCCGAGAAAGTTTTTCCTCCACTGGACTTTTCACTACAGCCACCGGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTTGAATGGAAGTTTAGGCATATTTTTCGAGGACAGCCAAAACGACATCTTCTTACAACTGGTTGGAGTGTGTTTGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTACTTTTTATATGGAATGAAAAAAATCAGCTTTTCTTGGGTATACGGCGTGCCACAAGACCACAAACTGTGATGCCCTCTTCTGTTTTATCAAGTGATAGCATGCACATTGGGCTCCTTGCTGCTGCTGCTCATGCTGCCGCAACTAATAGCTGTTTCACAGTTTTCTACAACCCCAGGGCTAGCCCATCGGAGTTTGTCATCCCTTTGACAAAATATGTTAAAGCTGTATTTCATACTCGCGTTTCAGTAGGAATGCGTTTTAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATTATGACCCTGTTCGTTGGCCGAATTCTCATTGGCGTTCTGTCAAGGTAGGGTGGGATGAGTCAACAGCTGGGGAGAGACAGCCAAGGGTATCATTATGGGAAATTGAGCCTTTAACTACCTTTCCTATGTATCCATCTCTGTTCCCACTTAGATTGAAACGTCCGTGGCATCCTGGAGTTTCTTCTGTTCATGATAACAGAGACGATGCGTCTAATAGCTTAATGTGGCTTCGGGGAGGAGTCACGGACCAGGCTCTACAATCACTGAATTTACAATCTATGGGTTCACTGCCTTGGTTGCAGCAGAGACTTGATTCTTCCATGTTTGGAAATGATCATAATCAACAGTATCAAGCCATGTTGGCTGCTGGAATGCCAAACTTTGGAGGTGTTGATATGCTGAGACAACAAATTATGCATCTTCAACAGCCTTTTCAGTATACCCAACAAGCTGGCTTTCAAAATTCTCTATTGCAGCTGCAGCAACAGCAACAGCAACAGCAGCAATTGGTTCAACAATCTATACCTCAGAACATCTTGCAGGCACCGAACCAAGCTATGGCGGAAAATCTACCCCAACATATTCTCCAGCAATCCTTGCAAAATCAACCTGAGGATCTGCCAAACCAGCAACATCATACTTATCATGATACCCTTCAGGTTCAGAACAATCAATTTCATCAGGGGGGGCATTCAAATGTGCCATCACAACCCACATTTCCCAGAACAGACCTTGTGGATTCCAACACCAGTTACTCGGAATCCATTACCCCTAGAAGAAACATACTTGCTTCATCATGTGCTGAAGGGACTGGAAATCTTTCCAATGTTTATCGAAGTGGGCAGTCAATCATAACCGAGCAGTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATTCGCAGGTTGATGCTCACGCGAACTCAATGTCCTTTCCACCATTTTCTGGTAGAGACTCAATTTTGGAGCTGGGAAATTGTAATTCAGATTCTCCAAGTCCTACACTTTTTGGTGTTAATATTGATTCATCTGGACTTCTACTTCCCTCTAATGTGCCCACTTACGCCTCTCCATCAATTGGTCCTGATGCATCCTCAATGCCAGTAGGAGATTCTGGATTTCAGAATTCTCTGTACAGTTGTGTTCAAGACTCTTCTGAGTTATTGCACGGCTCAGGGCAAGTTGATCCATCAAATCCAACTCGGACATTTGTTAAGGTCTACAAATCCGGGTCTGTTGGGCGCTCACTAGACATCTCCCGGTTCAGCAGCTATCAGCAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGAATAGAGGGGCAGTTGGAAGACCTTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGATGACCCTTGGGAGGCATTTGTCAATAATGTCTGGTATATCAAGATACTCTCTCCCCAGGATTTTCAGAAACTAGGCGAACGGGCAATCGAGTCCTTCAACGTATCGTCGGTCAGCGACTAG 2484 45.25 MKLSTSGFGQQDLEGGEKKCLNSELWHACAGPLVSLPSAGTRVVYFPQGHSEQVAATTNKEVDGHMPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDYDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNRDDASNSLMWLRGGVTDQALQSLNLQSMGSLPWLQQRLDSSMFGNDHNQQYQAMLAAGMPNFGGVDMLRQQIMHLQQPFQYTQQAGFQNSLLQLQQQQQQQQQLVQQSIPQNILQAPNQAMAENLPQHILQQSLQNQPEDLPNQQHHTYHDTLQVQNNQFHQGGHSNVPSQPTFPRTDLVDSNTSYSESITPRRNILASSCAEGTGNLSNVYRSGQSIITEQLPQQSPVSKNAHSQVDAHANSMSFPPFSGRDSILELGNCNSDSPSPTLFGVNIDSSGLLLPSNVPTYASPSIGPDASSMPVGDSGFQNSLYSCVQDSSELLHGSGQVDPSNPTRTFVKVYKSGSVGRSLDISRFSSYQQLREELAQMFGIEGQLEDLHRSGWQLVFVDRENDVLLLGDDPWEAFVNNVWYIKILSPQDFQKLGERAIESFNVSSVSD 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5736500 5748120 + Sed0004321.1 Sed03g0925 706412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0925 827 Gene3D - 292 364 - -
Sed03g0925 827 ProSiteProfiles PB1 domain profile. 724 809 IPR053793 -
Sed03g0925 827 Pfam AUX/IAA family 721 813 IPR033389 -
Sed03g0925 827 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677(InterPro)
Sed03g0925 827 Gene3D - 126 230 IPR015300 -
Sed03g0925 827 Gene3D - 720 813 - -
Sed03g0925 827 SUPERFAMILY CAD & PB1 domains 716 798 - -
Sed03g0925 827 FunFam Auxin response factor 126 230 - -
Sed03g0925 827 Pfam Auxin response factor 254 336 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed03g0925 827 FunFam Auxin response factor 719 813 - -
Sed03g0925 827 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
Sed03g0925 827 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
Sed03g0925 827 FunFam Auxin response factor 292 364 - -
Sed03g0925 827 CDD B3_DNA 127 223 IPR003340 GO:0003677(InterPro)
Sed03g0925 827 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Sed03g0925 827 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 814 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0925 Sed-Chr3:5736500 Sed14g1598 Sed-Chr14:24132416 7.20E-266 dispersed
Sed03g0925 Sed-Chr3:5736500 Sed03g0926 Sed-Chr3:5736500 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37786 PF02309 AUX_IAA 5.90E-09 CL0072 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0925 K14486 - csv:101208098 1532.69