Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0931 ATGCCCCTCACCACCAACCCCTCCTCCTCCGAACTCGCCCCCGTCGTCCCTCCGAGCTTCTCCGTCTCGGGACACCGCAAGAAGAGGATGCCCCGACACCGCCGCTCGTCTTCGGTCGTGAACTTCCCCTTCCCTCCTTCTTTCTCCTCTCACCTCACTTTCCCTCGGGTCATTGATCCAAGGAGGCTGCACTTTCTTTTTCAGAAGGAGCTGAAGAACAGTGATGTTAGCTCTCTAAGGAGAATGATACTACCAAAGAAAGCAGCTGAGACTCACCTCCCAAATTTGGAGTCTAAAGAAGGGATCATCATCACCATGGATGACTTGGATGGGGTGCATGTTTGGAACTTCAAATACAGGTTTTGGCCAAATAACAATAGTAGAATGTATGTACTTGAAAATACCGGGGACTTTGTCAATGCCCATGACTTGCGACTAGGAGATTCCATCATGCTTTACCAAGATTTTGAAGATCACAACTATTTCATTCAAGCAAAAAAGGCTTCAGATCACGAAATATATTCCAACATAGCAAGTAATGTCGTGATCAACGACAACATTGCCTTTCAAGACTACGATGCTATCTCAGCTGCCAGCTCCATATACGTGCCTAGTCCAACCATGGACGATCCTGTGTCATCGTTCATCTACGACACGAGTTGTGCTTTCGACAATGATTCACCCTTTGACTTTATGAGTGGCTCAACGACCAACTACTCAAGAATGGACGCTCTCGAAGGCTTTGAGTCGGTCGAGAACTTGTCCCTCGACGACTTCTACTAA 783 47.51 MPLTTNPSSSELAPVVPPSFSVSGHRKKRMPRHRRSSSVVNFPFPPSFSSHLTFPRVIDPRRLHFLFQKELKNSDVSSLRRMILPKKAAETHLPNLESKEGIIITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNAHDLRLGDSIMLYQDFEDHNYFIQAKKASDHEIYSNIASNVVINDNIAFQDYDAISAASSIYVPSPTMDDPVSSFIYDTSCAFDNDSPFDFMSGSTTNYSRMDALEGFESVENLSLDDFY 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5769766 5773574 + Sed0024400.1 Sed03g0931 706418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0931 260 CDD B3_DNA 65 167 IPR003340 GO:0003677(InterPro)
Sed03g0931 260 ProSiteProfiles B3 DNA-binding domain profile. 67 169 IPR003340 GO:0003677(InterPro)
Sed03g0931 260 Gene3D - 63 180 IPR015300 -
Sed03g0931 260 MobiDBLite consensus disorder prediction 1 16 - -
Sed03g0931 260 MobiDBLite consensus disorder prediction 1 34 - -
Sed03g0931 260 Pfam B3 DNA binding domain 67 165 IPR003340 GO:0003677(InterPro)
Sed03g0931 260 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 46 172 IPR044800 GO:0003700(InterPro)
Sed03g0931 260 SUPERFAMILY DNA-binding pseudobarrel domain 64 162 IPR015300 -
Sed03g0931 260 SMART B3_2 67 169 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0931 Sed-Chr3:5769766 Sed07g0199 Sed-Chr7:1706225 1.40E-29 dispersed
Sed01g2954 Sed-Chr1:26044011 Sed03g0931 Sed-Chr3:5769766 2.90E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37789 PF02362 B3 9.40E-18 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0931 K09287 - csv:101222512 379.022