Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0935 ATGGCGAGCCGATACTGGATGGTTTCGTTACCGGTTCAAGGCTCCGCTTCCTCTCTATGGAATCGCCTCCAAGAACAAATCTCCAAGCACTCTTTCGATACTCCTCTTTATCGATTCAATATTCCCAATCTCCGCGTTGGAACGCTCGATTCGCTCCTTTCCCTCAGCGATGATCTCCTCAAGTCGAACAGCTTTGTGGAAGGAGTTTCTCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAAGGTTTCCGGTGTGGAGAGCAATGTTTTGACGGTGGATGGAGTCCCCGTTGATTCGTACCTTACCAGGTTTGTGTGGGATGAAGCCAAGTACCCGACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCATAGTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACAATAACGTGCGAAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTACGTGATATTTCCAATCTTGTAAAACCAGAGGACATAGTTACCTCAGAACATCTATCAACCCTTCTTGTGGTTGTCCTCAAGTACTCACAGAAAGAATGGCTATCTAGCTATGAAACACTGACTAGCTATGTGGTTCCCAGGTCTTCCAAGAAGTTATACGAGGATAATGAATATGCCCTTTACACTGTAACACTCTTTAATCGCGTTGCAGACAATTTCAAAACAAGCGCACGTGAGAAAGGGTTCCAGATTCGTGAATTTGAATATAGTTCTGAAGCACAGGATAGTAGAAAACATGAGTTAGAAAAGTTAGTGCAGGGCCAGGAAAATTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCCGAGGTTTTCATTTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTTCTGAGAGTATCTTGAGATATGGTTTACCACCATCTTTCTTGGCATCTGTTTTGGCACCATCTCTCAAAAGCGAGAAGAAAGTTAGGTCAATCCTTGAAGGTTTGTGCGACAGTGCTAACAGTACATATTGGAAAACCGAAGATGAAATGGGAGGAGGGATGGCTGGCCTAGGAGGAGATTCGGAAGCACACCCATATGTGTCCTTCACAATCAATCTTGCCTAA 1131 44.65 MASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELEKVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIVTSEHLSTLLVVVLKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFNRVADNFKTSAREKGFQIREFEYSSEAQDSRKHELEKLVQGQENLRSSLLQWSYASYAEVFISWMHFCAVRVFSESILRYGLPPSFLASVLAPSLKSEKKVRSILEGLCDSANSTYWKTEDEMGGGMAGLGGDSEAHPYVSFTINLA 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5790077 5795006 + Sed0000891.1 Sed03g0935 706422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0935 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g0935 376 SUPERFAMILY Vacuolar ATP synthase subunit C 2 375 IPR036132 GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro)
Sed03g0935 376 Gene3D - 41 312 - -
Sed03g0935 376 FunFam V-type proton ATPase subunit C 163 251 - -
Sed03g0935 376 Gene3D - 163 251 - -
Sed03g0935 376 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
Sed03g0935 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g0935 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 375 IPR004907 GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2953 Sed-Chr1:26002426 Sed03g0935 Sed-Chr3:5790077 1.70E-201 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0935 K02148 - csv:101221574 698.738