Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g0937 | ATGAGTGAGAGGATCGAGAATTACCTGCGAAAGAACTTCGAACTCGAGCCGAAAGGTCAGTCGGAGGAGGCTCAAATGCGATGGCGATCCGCCGTCTCTATCGTCAAGAATCGCCGCCGGCGGTTCCGCATGGTTGCCGATCACGACAAGCGCGCTCAGGCCGAGAAGACGCGCAAGAAACTACAGGAAAAGATACGAGTAGCTCTATGCGTACAAAAAGCAGCATTGCATTTCATTGATGCTGGGAAGCGCGGTGGTTACAAGCTCTCCCCAGAAGTAAAGGAAGCTGGTTTTGGAGTTGATCCTGATGGATTAGCATCCCTTGTTCAGACTCACAACACCAAGAGTCTGGATCATTATGGGGGCGTTGAGGGATTGGCAAGAGAATTAAAAGTTTCTTTGAAAGATGGATTTGTTACAAGTGAAGTACCTTTAAGGCAGGACATATACGGCGTCAACCGTTATGTTGAGAAACCTTCAAGAGGCTTTTGGATGTTTGTATGGGAAGCCTTGCATGATTTGACTCTTATCATTCTCTTGGTTTCTTCTGTTGTTTCCATTGGAGTTGGAATTGCAACCGAAGGTTGGCCTAAAGGCATGTACGATGGACTTGGGATAATACTAAGTATTTTGCTGGTCGTGATGGTAACGGCAGTCAGTGACTATAATCAGTCGTTGCAATTTAAGGACTTGGAAAAGCAGAAGAAAAACATTATCATTCAAGTTACAAGAGATGGAACCAGACAGAAGGTTTCCATTTATGACTTGGTAGTTGGGGATATTGTTCATTTGTCGATTGGAGATCAAGTCCCAGCTGATGGCATTTTAGTGTCAGGCTACAGCTTATCACTTGATGAATCAAGCTTGTCAGGTGAAAGTGAACCTGTAAATGTAGATAATAAGAGGCCTTTTCTTCTAGCAGGGACCAAAGTGCAGGATGGGTCCGGTAAAATGCTAATTGCCTCGGTTGGGATGAGAACTGAATGGGGAAGATTGATGGTCACTTTGAGTGAAGGAGGAGATGATGAAACGCCACTTCAGGTAAAGCTTAATGGGGTTGCGACAATCATTGGAAAGATCGGGTTGGTTTTCGCGGTGTTAACGTTCATAGTTCTTATCTCGAGGTTTTTTGCGTATAAAGCATTACACAATCAGATTGGGCAATGGTCCTCCAACGATGCATCCACGCTTCTGAATTACTTTGCCATTGCTGTAATTATAATTGTTGTTGCTGTTCCAGAAGGATTGCCTCTGGCCGTGACACTAAGTCTTGCCTTTGCCATGAAAAGGTTAATGAAAGATATGGCACTTGTGCGGCATCTCTCTGCTTGTGAGACTATGGGTTCAGCAACCTGCATTTGCACTGATAAAACAGGCACCTTGACAACAAATCACATGGTCGTTGATAAAATATGGATCTGTGAAGAAACAAGGACTATAAAAAACGCCCACGATGAAACCGCTTTGAAAACCTCCTTGAACAAAACCGTGTATAATCTTCTTGTACAATCCATATTTCAAAATACTAGCTCAGAGGTGGTCAAAGGCAAAGATGGGAGGAACACCATTTTAGGCACTCCAACTGAGACTGCATTACTAGAATTTGGCTTGCTTTTGAGTGGTGCTTTTGGTTCATTAAATGATGTGTATAAGATTGTAAAAGTCGAGCCATTCAATTCAACTAGAAAGAAAATGTCTGTCCTCGTGGCTCTTCCCGGTGGCGGGTATCGAGCATTCTGCAAGGGAGCATCAGAAATCATATTATCAATGTGTGACAAGGTTCTCAATTCTGATGGAGAAGCATTTCCTCTTTCAGATGAAAAAAGAACAAACATCTCAAACATCATCGATAGTTTTGCAAGCGATGCTCTTCGAACTCTGTGCATCGCATACAGAGATATAAAAGTTTCTTCAGCACCAGACAAAATACCAGAAGGAGATTATACTTTAATCACTGTTATTGGCATTAAAGATCCTGTCCGTCCGGGCGTAAAGGAGGCAGTTCAGGCTTGTTTGGAGGCTGGAATAACTGTAAGGATGGTAACTGGGGATAACATAAACACGGCTAAAGCCATAGCCAAAGAGTGTGGGATTTTGACAGAAGGTGGTTTGGCAATAGAAGGGCCAGACTTTCGCAGCAAGAGCCAAGATGAAATGGAGAAGTTAATACCAAAACTCCAGGTGATGGCTCGTTCATCTCCTCTTGACAAGCACACGTTGGTAGGACAGTTGAGGAAAACGTTCAAGGAAGTGGTTGCTGTCACAGGCGATGGGACTAATGATGCCCCTGCTTTGCATGAGGCAGACATTGGCTTGGCCATGGGTATTGCGGGAACAGAGGTCGCAAAAGAAAATGCGGACGTAGTGATAATGGATGATAATTTCACAACCATTGTGAATGTTGCGAGATGGGGACGTGCAGTCTACATAAATATTCAGAAATTCGTACAGTTCCAGCTTACAGTAAACGTTGTGGCTCTCATGCTCAATTTCATATCTGCATGCGTTTCAGGTTCTGCTCCTCTGACTGCTGTTCAAATGCTATGGGTGAACCTGATAATGGACACATTGGGAGCTCTGGCTTTGGCAACAGAGCCTCCCAACGAGGGGCTGATGCAAAGAAAACCAATCGGCAGAAACGTTAATATCATCACTGGCACTATGTGGAGAAACATCATCGGTCAAAGCATCTACCAAATCACTGTCTTATTAATCCTCAAATTTGAAGGAAAGCGCCTGCTGAATCTTACTGGTCCTGATTCGAGTATCGTTCTCGACACATTCATCTTCAACTCCTTCGTGTTTTGCCAGGTGTTCAATGAAATAAACAGCCGAGACATGGAGAAGAAAAACGTGTTTAAAGGGATATGGGAGAGTTGGGTATTCACAGGAGTGATGGCCTGCACCATAGTTTTTCAAGTCTTAATTGTAGAATTTCTTGGCACATTTGCAGAAACAGTTCCATTAAGCTGGAATCTATGGGCAGCCAGCATCATTATCGGAGCTCTTAGTTTGCCCATAGCCGTCGTCCTCAAATGCATTCCTGTTTCAAACTCGAAAACCGCTCGTTGCTCACACGATGGCTACGAGCCCCTCCCAACTGGTCCAGAGTTGGCTTGA | 3120 | 44.1 | MSERIENYLRKNFELEPKGQSEEAQMRWRSAVSIVKNRRRRFRMVADHDKRAQAEKTRKKLQEKIRVALCVQKAALHFIDAGKRGGYKLSPEVKEAGFGVDPDGLASLVQTHNTKSLDHYGGVEGLARELKVSLKDGFVTSEVPLRQDIYGVNRYVEKPSRGFWMFVWEALHDLTLIILLVSSVVSIGVGIATEGWPKGMYDGLGIILSILLVVMVTAVSDYNQSLQFKDLEKQKKNIIIQVTRDGTRQKVSIYDLVVGDIVHLSIGDQVPADGILVSGYSLSLDESSLSGESEPVNVDNKRPFLLAGTKVQDGSGKMLIASVGMRTEWGRLMVTLSEGGDDETPLQVKLNGVATIIGKIGLVFAVLTFIVLISRFFAYKALHNQIGQWSSNDASTLLNYFAIAVIIIVVAVPEGLPLAVTLSLAFAMKRLMKDMALVRHLSACETMGSATCICTDKTGTLTTNHMVVDKIWICEETRTIKNAHDETALKTSLNKTVYNLLVQSIFQNTSSEVVKGKDGRNTILGTPTETALLEFGLLLSGAFGSLNDVYKIVKVEPFNSTRKKMSVLVALPGGGYRAFCKGASEIILSMCDKVLNSDGEAFPLSDEKRTNISNIIDSFASDALRTLCIAYRDIKVSSAPDKIPEGDYTLITVIGIKDPVRPGVKEAVQACLEAGITVRMVTGDNINTAKAIAKECGILTEGGLAIEGPDFRSKSQDEMEKLIPKLQVMARSSPLDKHTLVGQLRKTFKEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVVIMDDNFTTIVNVARWGRAVYINIQKFVQFQLTVNVVALMLNFISACVSGSAPLTAVQMLWVNLIMDTLGALALATEPPNEGLMQRKPIGRNVNIITGTMWRNIIGQSIYQITVLLILKFEGKRLLNLTGPDSSIVLDTFIFNSFVFCQVFNEINSRDMEKKNVFKGIWESWVFTGVMACTIVFQVLIVEFLGTFAETVPLSWNLWAASIIIGALSLPIAVVLKCIPVSNSKTARCSHDGYEPLPTGPELA | 1039 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 5798969 | 5807106 | - | Sed0012393.1 | Sed03g0937 | 706424 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g0937 | 1039 | Gene3D | - | 169 | 1013 | - | - | |
| Sed03g0937 | 1039 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 119 | 1017 | IPR023298 | - | |
| Sed03g0937 | 1039 | FunFam | Calcium-transporting ATPase | 20 | 80 | - | - | |
| Sed03g0937 | 1039 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 456 | 462 | IPR018303 | - | |
| Sed03g0937 | 1039 | Gene3D | - | 137 | 337 | - | - | |
| Sed03g0937 | 1039 | Gene3D | - | 451 | 800 | IPR023214 | - | |
| Sed03g0937 | 1039 | Pfam | haloacid dehalogenase-like hydrolase | 649 | 769 | - | - | |
| Sed03g0937 | 1039 | FunFam | Calcium-transporting ATPase | 772 | 1018 | - | - | |
| Sed03g0937 | 1039 | SUPERFAMILY | HAD-like | 453 | 860 | IPR036412 | - | |
| Sed03g0937 | 1039 | Gene3D | - | 464 | 659 | IPR023299 | GO:0000166(InterPro) | |
| Sed03g0937 | 1039 | SFLD | Haloacid Dehalogenase | 436 | 807 | - | - | |
| Sed03g0937 | 1039 | Pfam | E1-E2 ATPase | 240 | 433 | - | - | |
| Sed03g0937 | 1039 | Pfam | Cation transporter/ATPase, N-terminus | 119 | 186 | IPR004014 | - | |
| Sed03g0937 | 1039 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 460 | 664 | IPR023299 | GO:0000166(InterPro) | |
| Sed03g0937 | 1039 | PRINTS | P-type cation-transporting ATPase superfamily signature | 755 | 774 | - | - | |
| Sed03g0937 | 1039 | PRINTS | P-type cation-transporting ATPase superfamily signature | 285 | 299 | - | - | |
| Sed03g0937 | 1039 | PRINTS | P-type cation-transporting ATPase superfamily signature | 779 | 791 | - | - | |
| Sed03g0937 | 1039 | PRINTS | P-type cation-transporting ATPase superfamily signature | 454 | 468 | - | - | |
| Sed03g0937 | 1039 | PRINTS | P-type cation-transporting ATPase superfamily signature | 652 | 663 | - | - | |
| Sed03g0937 | 1039 | PRINTS | P-type cation-transporting ATPase superfamily signature | 674 | 684 | - | - | |
| Sed03g0937 | 1039 | PANTHER | CATION TRANSPORTING ATPASE | 73 | 1017 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Sed03g0937 | 1039 | CDD | P-type_ATPase_Ca_PMCA-like | 146 | 888 | - | - | |
| Sed03g0937 | 1039 | Gene3D | - | 20 | 81 | - | - | |
| Sed03g0937 | 1039 | FunFam | Calcium-transporting ATPase | 216 | 337 | - | - | |
| Sed03g0937 | 1039 | PRINTS | H+-transporting ATPase (proton pump) signature | 755 | 771 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed03g0937 | 1039 | PRINTS | H+-transporting ATPase (proton pump) signature | 787 | 812 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed03g0937 | 1039 | PRINTS | H+-transporting ATPase (proton pump) signature | 612 | 630 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed03g0937 | 1039 | Pfam | Cation transport ATPase (P-type) | 514 | 594 | - | - | |
| Sed03g0937 | 1039 | SMART | Cation_ATPase_N_a_2 | 117 | 191 | IPR004014 | - | |
| Sed03g0937 | 1039 | SUPERFAMILY | Calcium ATPase, transduction domain A | 239 | 333 | IPR008250 | - | |
| Sed03g0937 | 1039 | Pfam | Cation transporting ATPase, C-terminus | 840 | 1012 | IPR006068 | - | |
| Sed03g0937 | 1039 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 9 | 53 | IPR024750 | GO:0005516(InterPro) | |
| Sed03g0937 | 1039 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 111 | 1016 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Sed03g0937 | 1039 | FunFam | Calcium-transporting ATPase | 464 | 659 | - | - | |
| Sed03g0937 | 1039 | NCBIfam | HAD-IC family P-type ATPase | 206 | 518 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed03g0937 | 1039 | NCBIfam | HAD-IC family P-type ATPase | 725 | 843 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed03g0937 | 1039 | SFLD | p-type atpase | 436 | 807 | IPR044492 | - | |
| Sed03g0937 | 1039 | FunFam | Calcium-transporting ATPase | 652 | 800 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g0937 | Sed-Chr3:5798969 | Sed12g1100 | Sed-Chr12:7159031 | 0.00E+00 | dispersed | |
| Sed03g0937 | Sed-Chr3:5798969 | Sed13g1802 | Sed-Chr13:23042008 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g0937 | K01537 | - | csv:101203529 | 1762.66 |