Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0942 ATGTGGCGTTGGGTATCAATGATTAGAGCCATCTGTTCCCTAAAACCCCAAACTCTGCAATTCCACAAATCCGCCATTGACGGACCTTCAACCCCTACAATGTCTGCTCCTTCCAACAACGCCGCCATCATCGACCTTTCTCATCGGAGTTCCGCCGTCAAGAAACCCCCCTCCGCCGACCGCCACAGCAAGGTCGACGGCCGCGGCCGCCGCATCCGCATGCCCATCATCTGCGCCGCCCGTGTCTTCCAACTCACCCGCGAGTTGGGCCACAAGTCCGACGGCCAAACCATCGAGTGGCTCCTCCGTCAAGCCGAGCCTTCCATCATCGCCGCCACCGGCTCCGGCACCACTCCCGCCTCCTTCTCCACCTTCTCCTCCGCCGCCGTTTCCGCCTCTTCTTCTTCTTCCTCTCTTTTCGCATCTCTCGACCACAAGCCCCTTCTGCCTATTCTCGGCAAGCGCGTCAGAGCCGGCGACCATGGAGATGGCAAAGACGACGGCGGCGATGGCGGTGGCGGTGGGATTTCCGTCGGCTCTACTTTGGGTTCAATTATGGGTTCCGGCGGCTACTGGGCGATTCCGTCCAGGCCAGATTTCGGGCAGGTGTGGAATTTCTCCGCCGCGCCGGAGATGGTGATTCAGCCGGCGGCGTCACTGTTCGTTCAGCAGCAGTCAATCGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCGGGGCATCTCAATTTGCTTGCGTCTCTATCGGGGGCAAGTTCCGGCCGGAGAGATAACAACCACCATTGA 789 60.08 MWRWVSMIRAICSLKPQTLQFHKSAIDGPSTPTMSAPSNNAAIIDLSHRSSAVKKPPSADRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSTFSSAAVSASSSSSSLFASLDHKPLLPILGKRVRAGDHGDGKDDGGDGGGGGISVGSTLGSIMGSGGYWAIPSRPDFGQVWNFSAAPEMVIQPAASLFVQQQSIGEASAAKVGNYLPGHLNLLASLSGASSGRRDNNHH 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5846602 5847955 + Sed0007987.1 Sed03g0942 706429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0942 262 MobiDBLite consensus disorder prediction 156 176 - -
Sed03g0942 262 Pfam TCP family transcription factor 59 138 IPR017887 -
Sed03g0942 262 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 41 161 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Sed03g0942 262 ProSiteProfiles TCP domain profile. 58 112 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0942 K16221 - - csv:101214586 250.366
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0942 Sed-Chr3:5846602 Sed04g2781 Sed-Chr4:39860997 1.70E-51 dispersed
Sed03g0942 Sed-Chr3:5846602 Sed07g2387 Sed-Chr7:39681351 4.40E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g2387 . 25 228 TCP Transcription Factor Family AT5G23280 63.8 1.1e-60 231.1
Sed04g2781 . 38 242 TCP Transcription Factor Family AT5G23280 58.0 1.4e-55 214.2
Sed03g0942 . 56 255 TCP Transcription Factor Family AT5G23280 59.0 4.1e-55 212.6
Sed04g2197 . 21 318 TCP Transcription Factor Family AT2G45680 52.3 1.4e-69 261.2
Sed06g1538 . 56 171 TCP Transcription Factor Family AT3G47620 78.8 1.7e-41 168.3
Sed08g2057 . 39 140 TCP Transcription Factor Family AT3G47620 81.4 1.1e-38 159.1
Sed08g1502 . 48 300 TCP Transcription Factor Family AT3G27010 55.4 4.5e-59 226.1
Sed06g0434 . 8 269 TCP Transcription Factor Family AT3G27010 53.9 6.5e-58 222.2
Sed07g2387 . 1 227 TCP Transcription Factor Family AT5G08330 58.4 1.2e-56 217.6
Sed03g0942 . 36 261 TCP Transcription Factor Family AT5G08330 58.3 1.6e-56 217.2
Sed04g2781 . 25 239 TCP Transcription Factor Family AT5G08330 56.1 5.1e-55 212.2
Sed13g0592 . 31 378 TCP Transcription Factor Family AT1G53230 52.9 3.6e-82 303.1
Sed06g0853 . 45 205 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g0854 . 43 203 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g1441 . 44 153 TCP Transcription Factor Family AT3G02150 70.2 2.5e-37 154.1
Sed04g1559 . 190 399 TCP Transcription Factor Family AT2G31070 50.5 3.7e-41 166.8
Sed13g0592 . 30 215 TCP Transcription Factor Family AT2G31070 53.9 4.1e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37793 PF03634 TCP 4.80E-31 No_clan Sed TF