Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0942 ATGTGGCGTTGGGTATCAATGATTAGAGCCATCTGTTCCCTAAAACCCCAAACTCTGCAATTCCACAAATCCGCCATTGACGGACCTTCAACCCCTACAATGTCTGCTCCTTCCAACAACGCCGCCATCATCGACCTTTCTCATCGGAGTTCCGCCGTCAAGAAACCCCCCTCCGCCGACCGCCACAGCAAGGTCGACGGCCGCGGCCGCCGCATCCGCATGCCCATCATCTGCGCCGCCCGTGTCTTCCAACTCACCCGCGAGTTGGGCCACAAGTCCGACGGCCAAACCATCGAGTGGCTCCTCCGTCAAGCCGAGCCTTCCATCATCGCCGCCACCGGCTCCGGCACCACTCCCGCCTCCTTCTCCACCTTCTCCTCCGCCGCCGTTTCCGCCTCTTCTTCTTCTTCCTCTCTTTTCGCATCTCTCGACCACAAGCCCCTTCTGCCTATTCTCGGCAAGCGCGTCAGAGCCGGCGACCATGGAGATGGCAAAGACGACGGCGGCGATGGCGGTGGCGGTGGGATTTCCGTCGGCTCTACTTTGGGTTCAATTATGGGTTCCGGCGGCTACTGGGCGATTCCGTCCAGGCCAGATTTCGGGCAGGTGTGGAATTTCTCCGCCGCGCCGGAGATGGTGATTCAGCCGGCGGCGTCACTGTTCGTTCAGCAGCAGTCAATCGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCGGGGCATCTCAATTTGCTTGCGTCTCTATCGGGGGCAAGTTCCGGCCGGAGAGATAACAACCACCATTGA 789 60.08 MWRWVSMIRAICSLKPQTLQFHKSAIDGPSTPTMSAPSNNAAIIDLSHRSSAVKKPPSADRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSTFSSAAVSASSSSSSLFASLDHKPLLPILGKRVRAGDHGDGKDDGGDGGGGGISVGSTLGSIMGSGGYWAIPSRPDFGQVWNFSAAPEMVIQPAASLFVQQQSIGEASAAKVGNYLPGHLNLLASLSGASSGRRDNNHH 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5846602 5847955 + Sed0007987.1 Sed03g0942 706429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0942 262 MobiDBLite consensus disorder prediction 156 176 - -
Sed03g0942 262 Pfam TCP family transcription factor 59 138 IPR017887 -
Sed03g0942 262 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 41 161 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Sed03g0942 262 ProSiteProfiles TCP domain profile. 58 112 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0942 Sed-Chr3:5846602 Sed04g2781 Sed-Chr4:39860997 1.70E-51 dispersed
Sed03g0942 Sed-Chr3:5846602 Sed07g2387 Sed-Chr7:39681351 4.40E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37793 PF03634 TCP 4.80E-31 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0942 K16221 - csv:101214586 250.366