Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0974 ATGTCTTCTTCTCTTTCATGGATCCTGTTCTTTTCCCTCTCGTTTACCTTTTCCGGCACCGGCGGCTCGGTTTCCGATGATGCAATGTCGCTCCTCATGTTCAAGGGCTCGATTTCGCTCCACGGCTCTGATGCTCTTCGTCGCTGGAATTTGTCGATTTCTCACTGCGACTGGTTCGGAGTTACTTGCGATGGTGTTACTGGCAGAGTTGTTGCGGTGAATATCAGTGGAAGTGCTGGTGTTCTGGATGGGACGTTGAATCCGGCGATTGGAGATCTTGCGGAGCTTCGTGTTCTGTCGCTTCCGGATAATCTGATCTACGGGGAGATTCCTGTGAGTGTTGGTAAGCTTCAGTCGTTGGAGGTTCTTGAGCTTCAAGGGAACAATTTCTCTGGAAAAATTCCGAAACAGATAAGTTCTCTTCGATCTCTTCGCTTGCTTAATTTGTCTGATAACTCGTTTTATGGCTCGATACCGAGTAGATTGATCGGTTCGGCGAAATTGGAAGCGATTGATTTATCGTATAATCGGTTATCTGGTAGGATTCGTGTTTTGGATCATAGATGTAGCGTTTTGAATCATTTAAGGCTTTCGCATAACTTTCTGACTGATAACATTCCGGCTGAGATTGGACAATGTCGGAATCTGAAGACTCTGTTCCTTGATAGTAATGTATTAGAGGGTCAAATTCCGGCTGAGATTGGCCAAATTTCAGAACTCAGAATTCTTGATGTTTCTAGGAATAGCCTTACTGATTCGATTCCGAAAGAGCTCGGAAACTGCCGGAAGTTGTCACAGATCGTGTTGACGAATTTGAACGATATCAATCCCGACGACAACGATAGTTTAAGAGGGGAATTCAATGCTTTCAATGGAGGTATTCCTGCTGAGTTGTTGTTGATTCCAAGTCTACAGGTTTTTTGGGCACCAAGAGGGAATTTTATTGGCAAATTGCCTAATAATTGGAGTTCTTCATGCTCGCTTAGAGTTCTCAATTTAGGGCAAAATTACATCACTGGTGCCATACCCGAATCGATTCAGAAATGTTCGAATCTAACTTACCTGGATTTATCTTCAAACAAGCTACAAGGAAACCTCCCTATGCAGCTTCAAGTTTCATGTATGGTGTATTTCAATGTTAGCCAGAACAAAATTTCTGGTGTGCTTCCAAGATTAGGGAAAGAAAGTTACTGCAGGAGTAAGATTCCACATGTCCCAGTTCCTAATTTTTTTTATGAGGAAGGTGATTGGAAATGGAATTCTTTCTTCAGTTTTCCTGTTTGGGATTTCCTGACATTGAATGATAATCTCATAATCGCCCATGATCTTAGCTCGAATAGGTTCACTGGTTCATTAACTTCATTTAGAGTGGGAGAAGAGCTTTTGGCTATTGGCCGCAAGTTCTCTTACAAACTGTTTCTTGATAGCAACCAGTTCAATGGATCACTTCCCTTTGATCTGGTTTCGAACTGTAATGATATGAATAGCGTTTCGGTTAACTTGAGTTCAAACTTAGTATCAGGTGATATTTCTGATGCATTTTTTCTCCATTGTCGACAGATGATGGAGTTTGAGGCAGCAAACAATGAATTAGATAACTGGATTGGACCTGGAATTGGCAACTTGCAGATGCTTCTTGGTCTCGACTTGAGAGGGAATAGATTGTCTGGAGTTTTACCAGATCAGTTGGGGAAGTTGCAGAGTTTGAACTGGATGCTTTTAGGGGGAAACAATTTCACTGGAGAGATTCCATTTCGACTCGGTCAATTGACTTCTCTCAAGAGCTTAGATCTTTCTCGAAACAAATTTACAGGAGTCATCCCTGAAAGCCTGTCATATGCTTCAAGACTTGAGATTCTGTTGCTTGATCATAACAGGTTAGCTGGGGAAATACCATCATCTCTCTCTGCCCTTTCTCATCTCACTAAATTGGATGTCTCTTTTAACAACCTTTCTGGCCACATTCCTCATCTTCAGCACATGATTGACTGTGTTTACTTTAGTGGGAATAATTTTCTGCATCCATGCCCAGATTCATACTCCGAGACCCCAGCTGGACTTCCGATTCCTCTCGACGTTGAGAAGTGGAAGAGACAAAGAAAGTTTGTGTCTATGATAATTGTTGTGGCTGCTTCCTCAACTCTAATTTGCATACTCATAATAATAGCTGTTATCATCATTGTGAAGAAAAAGTTTAGTAGACAAAATAGGTTAAAGAAACCAGTGGTGACTTTCTCAGATGCTCCTTCTGATCTTAATTATGATAATGTGGTTCGAGCCACTGAAAATTTCAGCCTTCGCTACCTAATTGGTTCCGGTGGCTTTGGGTCAACATACAAGGCTGAACTGCCCTCAGGTTTCCTGGTTGCTGTAAAGAGACTGTCCATTGGTAGGTTTCAAGGAGGCATTCAACAATTCGATGCAGAGATTCGAACATTGGGAAGAATACGACACAAAAACCTTGTAACTCTTCTTGGGTACTATGTTGGAGAGGCTGAGATGTTCTTAGTTTACAACTATCTTTCCGGTGGTAACCTCGAGACCTTCATTCATGAAAAATCTTGCAAACATGTAAAGCACTCGGTGATCCACAAGATCGCTTTGGACATAGCGAGGGCTCTTGCATACCTACATCACTCCTGTGCTCCTAGGATTGTTCATAGAGACATCAAGCCTAGTAACATCCTGCTCGATGAGGAGCACAACACTTACATATCAGATTTCGGGTTGGCCAGGCTTCTTGAGGTCTCAGAAACTCATGCCACAACAGATGTGGCAGGAACATTTGGATATGTTGCACCAGAATATGCTACCACTTGCAGGGTCTCGGACAAGGCTGATGTTTATAGCTTTGGAGTCGTTCTCTTAGAGTTGCTTTCTGGGAAAAGGTCGCTCGATCGTTCGTTTTCCGACTTTGGGAATGGGTTTAACATCGTTACATGGGCAAAGATGCTGATCAAGGAAGGTCGTTCTTCTGAGCTTTTCACTCCTGAACTTTGGGAAATGGGACCAAACGAACACTTACTTGGAATGCTAAAGGTAGCATCTCATTGCACAGTTGAAATTCTCGCTCTTCGACCGTCGATGAAGCAGGTTGTCGAGACACTGAAACAGTTGTAA 3120 42.63 MSSSLSWILFFSLSFTFSGTGGSVSDDAMSLLMFKGSISLHGSDALRRWNLSISHCDWFGVTCDGVTGRVVAVNISGSAGVLDGTLNPAIGDLAELRVLSLPDNLIYGEIPVSVGKLQSLEVLELQGNNFSGKIPKQISSLRSLRLLNLSDNSFYGSIPSRLIGSAKLEAIDLSYNRLSGRIRVLDHRCSVLNHLRLSHNFLTDNIPAEIGQCRNLKTLFLDSNVLEGQIPAEIGQISELRILDVSRNSLTDSIPKELGNCRKLSQIVLTNLNDINPDDNDSLRGEFNAFNGGIPAELLLIPSLQVFWAPRGNFIGKLPNNWSSSCSLRVLNLGQNYITGAIPESIQKCSNLTYLDLSSNKLQGNLPMQLQVSCMVYFNVSQNKISGVLPRLGKESYCRSKIPHVPVPNFFYEEGDWKWNSFFSFPVWDFLTLNDNLIIAHDLSSNRFTGSLTSFRVGEELLAIGRKFSYKLFLDSNQFNGSLPFDLVSNCNDMNSVSVNLSSNLVSGDISDAFFLHCRQMMEFEAANNELDNWIGPGIGNLQMLLGLDLRGNRLSGVLPDQLGKLQSLNWMLLGGNNFTGEIPFRLGQLTSLKSLDLSRNKFTGVIPESLSYASRLEILLLDHNRLAGEIPSSLSALSHLTKLDVSFNNLSGHIPHLQHMIDCVYFSGNNFLHPCPDSYSETPAGLPIPLDVEKWKRQRKFVSMIIVVAASSTLICILIIIAVIIIVKKKFSRQNRLKKPVVTFSDAPSDLNYDNVVRATENFSLRYLIGSGGFGSTYKAELPSGFLVAVKRLSIGRFQGGIQQFDAEIRTLGRIRHKNLVTLLGYYVGEAEMFLVYNYLSGGNLETFIHEKSCKHVKHSVIHKIALDIARALAYLHHSCAPRIVHRDIKPSNILLDEEHNTYISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKRSLDRSFSDFGNGFNIVTWAKMLIKEGRSSELFTPELWEMGPNEHLLGMLKVASHCTVEILALRPSMKQVVETLKQL 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6030370 6034368 + Sed0022655.1 Sed03g0974 706461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0974 1039 FunFam Leucine-rich repeat receptor-like protein kinase 24 184 - -
Sed03g0974 1039 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 281 366 - -
Sed03g0974 1039 CDD STKc_IRAK 770 1039 - -
Sed03g0974 1039 SUPERFAMILY L domain-like 87 661 - -
Sed03g0974 1039 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 841 1039 - -
Sed03g0974 1039 Pfam Leucine Rich Repeat 240 261 IPR001611 GO:0005515(InterPro)
Sed03g0974 1039 Pfam Leucine Rich Repeat 192 213 IPR001611 GO:0005515(InterPro)
Sed03g0974 1039 Pfam Leucine Rich Repeat 547 566 IPR001611 GO:0005515(InterPro)
Sed03g0974 1039 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 728 840 - -
Sed03g0974 1039 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0974 1039 SMART serkin_6 764 1039 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0974 1039 Gene3D Transferase(Phosphotransferase) domain 1 841 1039 - -
Sed03g0974 1039 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 187 276 - -
Sed03g0974 1039 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Sed03g0974 1039 Gene3D Ribonuclease Inhibitor 285 402 IPR032675 -
Sed03g0974 1039 Gene3D Ribonuclease Inhibitor 403 689 IPR032675 -
Sed03g0974 1039 ProSiteProfiles Protein kinase domain profile. 764 1039 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0974 1039 Gene3D Ribonuclease Inhibitor 188 284 IPR032675 -
Sed03g0974 1039 SUPERFAMILY Protein kinase-like (PK-like) 746 1036 IPR011009 -
Sed03g0974 1039 Pfam Protein kinase domain 769 966 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0974 1039 Gene3D Phosphorylase Kinase; domain 1 725 840 - -
Sed03g0974 1039 SUPERFAMILY L domain-like 472 581 - -
Sed03g0974 1039 SMART LRR_typ_2 590 613 IPR003591 -
Sed03g0974 1039 SMART LRR_typ_2 141 165 IPR003591 -
Sed03g0974 1039 SMART LRR_typ_2 117 140 IPR003591 -
Sed03g0974 1039 SMART LRR_typ_2 638 660 IPR003591 -
Sed03g0974 1039 SMART LRR_typ_2 237 261 IPR003591 -
Sed03g0974 1039 SMART LRR_typ_2 542 565 IPR003591 -
Sed03g0974 1039 ProSitePatterns Protein kinases ATP-binding region signature. 770 792 IPR017441 GO:0005524(InterPro)
Sed03g0974 1039 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515(InterPro)
Sed03g0974 1039 Pfam Leucine rich repeat 592 651 IPR001611 GO:0005515(InterPro)
Sed03g0974 1039 Pfam Leucine rich repeat 312 362 IPR001611 GO:0005515(InterPro)
Sed03g0974 1039 PRINTS Leucine-rich repeat signature 590 603 - -
Sed03g0974 1039 PRINTS Leucine-rich repeat signature 352 365 - -
Sed03g0974 1039 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 1038 IPR050647 -
Sed03g0974 1039 Gene3D Ribonuclease Inhibitor 26 187 IPR032675 -
Sed03g0974 1039 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 434 683 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0974 Sed-Chr3:6030370 Sed07g1049 Sed-Chr7:7561561 3.20E-61 dispersed
Sed03g0974 Sed-Chr3:6030370 Sed06g1472 Sed-Chr6:39478834 2.20E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78884 PF00069 Pkinase 1.50E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0974 - - - 0.0