Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0981 ATGGCGATTTCTGAACAATCCTCTCGCCAAACTCTAATTCCCAGCTTCCTTTATTCCTCACCTTCTTCCACTCGCGTTCTTCCCCTCAACAAGATGCTTCAATCTTCGCCCGCTCCTCCCAAGAGCTTTGTGATTCCCGCCCCGTCCGAGCCGTCTAAGAAGATCGAGATGTACTCGCCGGCGTTCTACACCGCTTGTACTTTTGGTGGAATTCTCAGCTGCGGTCTCACGCATATGACTGTTACTCCTCTCGATTTGGTTAAATGCAATATGCAGATTGACCCTGCGAAATACAAAAGCATTTCGTCTGGTTTTGGAGTTTTGCTTAAGGAGCAGGGTGTGAAGGGTTTCTTTAGGGGGTGGGTGCCAACCCTTCTTGGCTACAGTGCACAGGGTGCCTGCAAATTTGGTTTCTACGAGTTCTTTAAGAAGTATTACTCCGATATTGCTGGACCCGAGTACGCAGCTAAATACAAGACCTTGATCTACCTTGCCGGCTCTGCATCTGCTGAGGTGATTGCTGATGTTGCCCTTTGCCCTTTCGAAGCAGTGAAGGTTCGAGTTCAGACTCAACCTGGTTTTGCCAGGGGACTGGCAGATGGACTTCCCAAGTTTGTCAAATCTGAAGGAACTCTAGGGTTGTACAAGGGTATTGTTCCACTCTGGGGACGCCAGATTCCATACACAATGATGAAGTTTGCTTCCTTTGAGACAATAGTGGAGATGCTATACAAGTATGCAATTCCCACACCAAAGGATCAGTGCAGCAAATCTCTTCAGCTTGGCGTTAGTTTTGCTGGTGGATATGTGGCTGGTGTTTTGTGTGCTATTGTGTCTCATCCTGCTGATAATCTTGTTTCCTTCCTCAACAATGCCAAAGGAGCAACTGTTGGTGATGCTGTCAAGAAACTCGGATTATGGGGTCTCTTCACCCGCGGTCTACCCCTCCGTATCGTTATGATCGGAACTCTTACTGGTGCTCAGTGGGGTCTTTATGATGCATTCAAAGTATTTGTTGGACTGCCTACTACTGGTGGTGTTGCTCCTGCTGCCCCTGCATTGGCTGCTGTTCCAAATGCGTGA 1083 48.2 MAISEQSSRQTLIPSFLYSSPSSTRVLPLNKMLQSSPAPPKSFVIPAPSEPSKKIEMYSPAFYTACTFGGILSCGLTHMTVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGVKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLADGLPKFVKSEGTLGLYKGIVPLWGRQIPYTMMKFASFETIVEMLYKYAIPTPKDQCSKSLQLGVSFAGGYVAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGLYDAFKVFVGLPTTGGVAPAAPALAAVPNA 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6075427 6078726 + Sed0008009.1 Sed03g0981 706468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0981 360 ProSiteProfiles Solute carrier (Solcar) repeat profile. 259 338 IPR018108 -
Sed03g0981 360 ProSiteProfiles Solute carrier (Solcar) repeat profile. 61 145 IPR018108 -
Sed03g0981 360 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 42 348 IPR044677 GO:0005315(PANTHER)|GO:0005315(InterPro)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
Sed03g0981 360 FunFam Phosphate carrier protein, mitochondrial 61 339 - -
Sed03g0981 360 Gene3D Mitochondrial carrier domain 154 340 IPR023395 -
Sed03g0981 360 Gene3D Mitochondrial carrier domain 11 153 IPR023395 -
Sed03g0981 360 Pfam Mitochondrial carrier protein 63 148 IPR018108 -
Sed03g0981 360 Pfam Mitochondrial carrier protein 159 246 IPR018108 -
Sed03g0981 360 ProSiteProfiles Solute carrier (Solcar) repeat profile. 158 242 IPR018108 -
Sed03g0981 360 SUPERFAMILY Mitochondrial carrier 64 334 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0981 Sed-Chr3:6075427 Sed08g1540 Sed-Chr8:30270133 1.00E-155 dispersed
Sed03g0981 Sed-Chr3:6075427 Sed03g0982 Sed-Chr3:6080799 1.00E-75 tandem
Sed11g1566 Sed-Chr11:31211942 Sed03g0981 Sed-Chr3:6075427 3.60E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0981 K15102 - csv:101221771 647.121