Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0987 ATGACAACCCAGCCGCAGAGTTCTGATTCGAATCCCGTTTCAGGTGCTTGTCTCTTTGATCTCCTGTTTCCAGATTCGGAAATGCCGGGCTGGGATTGGTGTCGAATGCCCTCTGATTCAGAAACGCAATCCTGGAACTGGAAAAAGGATCAACAGCTCTCTGGTCCCCAGAAAAGGTTGGAAGATATGCTGCATCATTCTGGTAATAAGTTTTGTGCAGATTGTAACTCACCGGAACCGAAATGGGTATCGTTAAATTTGGGAGTTTTTATCTGCATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAACTAGATAATTGGACGGATGAACATGTCAATTCTTTGATAAGCATGGGCGGAAACTCAAATGTAAACAAGAAGTATGAAGCAGGCATCATGGATATGAACAAGAAACCAAAACCAGATTCCTGTATAGAGGAGCGCTTCGATTTTATAAGGAGAAAGTATGAACGGCTACAATTCTATAATGTCAATAGTCATAACTCTAGTGATAACCACTCATTAAGTAAAAGGAGTTCACCTTCACCATGTTCTCAAAACAACTCTTCAAGCAAGAATGGTACTCAGGAGAAAAGGCACTTTGAGAAACAAGCTACTCGGCATCGGATTGGGAATGCATTTCGTAACAGTCGGATGAGAAGAGATAGTGACCACAAGAGTTTTGACAAGAATGGCCCTTCAGTTTCGAGACAATCATCGGCAGGTATGGTTGAATTTGTTGGGTTGATAAAGGTCAACGTGGTTAAAGGCACTAACCTAGCTGTTCGAGACGTGGTGACCAGTGATCCCTATGTAATTCTCATGTTGGGTCATCAAACGGTGAAGACTCGAGTCATAAAGAACAACCTTAACCCAGTTTGGAATGAGAGCCTAATGCTGTCGATTCCTGAGCATATTCCTCCATTAAAAGTGCTTGTCTATGATAAGGATACATTTTCGACTGATGACTTTATGGGCGAGGCTGAAATCGACATTCAACCATTGGTTGCTGCCACAAAGGCCTACGAGAAGTCGACAATTGATGAATCGATGCAGCTGGGGAAATGGGTGGCAAGTAATGACAATACCTTGGTAAAAGATGGAATCATTAACGTAGCAGATGGAAAGGTTAGACAGGGTATATCTCTTAGATTGCAGAATGTGGAGAGAGGCATTCTGGATATTGAGCTAGAATGCATTCCTCTAACACAATAG 1245 42.17 MTTQPQSSDSNPVSGACLFDLLFPDSEMPGWDWCRMPSDSETQSWNWKKDQQLSGPQKRLEDMLHHSGNKFCADCNSPEPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEHVNSLISMGGNSNVNKKYEAGIMDMNKKPKPDSCIEERFDFIRRKYERLQFYNVNSHNSSDNHSLSKRSSPSPCSQNNSSSKNGTQEKRHFEKQATRHRIGNAFRNSRMRRDSDHKSFDKNGPSVSRQSSAGMVEFVGLIKVNVVKGTNLAVRDVVTSDPYVILMLGHQTVKTRVIKNNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNDNTLVKDGIINVADGKVRQGISLRLQNVERGILDIELECIPLTQ 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6092991 6101948 - Sed0013477.1 Sed03g0987 706474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0987 414 Pfam Putative GTPase activating protein for Arf 58 173 IPR001164 GO:0005096(InterPro)
Sed03g0987 414 MobiDBLite consensus disorder prediction 177 204 - -
Sed03g0987 414 CDD C2_ArfGAP 257 401 - -
Sed03g0987 414 MobiDBLite consensus disorder prediction 177 248 - -
Sed03g0987 414 SMART C2_3c 259 354 IPR000008 -
Sed03g0987 414 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 349 IPR035892 -
Sed03g0987 414 PRINTS HIV Rev interacting protein signature 88 105 IPR001164 GO:0005096(InterPro)
Sed03g0987 414 PRINTS HIV Rev interacting protein signature 69 88 IPR001164 GO:0005096(InterPro)
Sed03g0987 414 PRINTS HIV Rev interacting protein signature 109 130 IPR001164 GO:0005096(InterPro)
Sed03g0987 414 Pfam C2 domain 259 347 IPR000008 -
Sed03g0987 414 Gene3D Arf GTPase activating protein 38 180 IPR038508 -
Sed03g0987 414 SUPERFAMILY ArfGap/RecO-like zinc finger 57 172 IPR037278 -
Sed03g0987 414 MobiDBLite consensus disorder prediction 205 241 - -
Sed03g0987 414 ProSiteProfiles C2 domain profile. 239 356 IPR000008 -
Sed03g0987 414 ProSiteProfiles ARF GTPase-activating proteins domain profile. 57 181 IPR001164 GO:0005096(InterPro)
Sed03g0987 414 Gene3D C2 domain 257 401 IPR035892 -
Sed03g0987 414 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 46 414 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Sed03g0987 414 FunFam stromal membrane-associated protein 1 isoform X1 41 177 - -
Sed03g0987 414 SMART arf_gap_3 57 179 IPR001164 GO:0005096(InterPro)
Sed03g0987 414 CDD ArfGap 60 166 - -
Sed03g0987 414 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 256 414 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0987 Sed-Chr3:6092991 Sed07g2303 Sed-Chr7:38818033 4.70E-133 dispersed
Sed03g0987 Sed-Chr3:6092991 Sed03g0988 Sed-Chr3:6092991 2.40E-201 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0987 K12486 - csv:101215531 705.286