Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0987 | ATGACAACCCAGCCGCAGAGTTCTGATTCGAATCCCGTTTCAGGTGCTTGTCTCTTTGATCTCCTGTTTCCAGATTCGGAAATGCCGGGCTGGGATTGGTGTCGAATGCCCTCTGATTCAGAAACGCAATCCTGGAACTGGAAAAAGGATCAACAGCTCTCTGGTCCCCAGAAAAGGTTGGAAGATATGCTGCATCATTCTGGTAATAAGTTTTGTGCAGATTGTAACTCACCGGAACCGAAATGGGTATCGTTAAATTTGGGAGTTTTTATCTGCATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAACTAGATAATTGGACGGATGAACATGTCAATTCTTTGATAAGCATGGGCGGAAACTCAAATGTAAACAAGAAGTATGAAGCAGGCATCATGGATATGAACAAGAAACCAAAACCAGATTCCTGTATAGAGGAGCGCTTCGATTTTATAAGGAGAAAGTATGAACGGCTACAATTCTATAATGTCAATAGTCATAACTCTAGTGATAACCACTCATTAAGTAAAAGGAGTTCACCTTCACCATGTTCTCAAAACAACTCTTCAAGCAAGAATGGTACTCAGGAGAAAAGGCACTTTGAGAAACAAGCTACTCGGCATCGGATTGGGAATGCATTTCGTAACAGTCGGATGAGAAGAGATAGTGACCACAAGAGTTTTGACAAGAATGGCCCTTCAGTTTCGAGACAATCATCGGCAGGTATGGTTGAATTTGTTGGGTTGATAAAGGTCAACGTGGTTAAAGGCACTAACCTAGCTGTTCGAGACGTGGTGACCAGTGATCCCTATGTAATTCTCATGTTGGGTCATCAAACGGTGAAGACTCGAGTCATAAAGAACAACCTTAACCCAGTTTGGAATGAGAGCCTAATGCTGTCGATTCCTGAGCATATTCCTCCATTAAAAGTGCTTGTCTATGATAAGGATACATTTTCGACTGATGACTTTATGGGCGAGGCTGAAATCGACATTCAACCATTGGTTGCTGCCACAAAGGCCTACGAGAAGTCGACAATTGATGAATCGATGCAGCTGGGGAAATGGGTGGCAAGTAATGACAATACCTTGGTAAAAGATGGAATCATTAACGTAGCAGATGGAAAGGTTAGACAGGGTATATCTCTTAGATTGCAGAATGTGGAGAGAGGCATTCTGGATATTGAGCTAGAATGCATTCCTCTAACACAATAG | 1245 | 42.17 | MTTQPQSSDSNPVSGACLFDLLFPDSEMPGWDWCRMPSDSETQSWNWKKDQQLSGPQKRLEDMLHHSGNKFCADCNSPEPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEHVNSLISMGGNSNVNKKYEAGIMDMNKKPKPDSCIEERFDFIRRKYERLQFYNVNSHNSSDNHSLSKRSSPSPCSQNNSSSKNGTQEKRHFEKQATRHRIGNAFRNSRMRRDSDHKSFDKNGPSVSRQSSAGMVEFVGLIKVNVVKGTNLAVRDVVTSDPYVILMLGHQTVKTRVIKNNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNDNTLVKDGIINVADGKVRQGISLRLQNVERGILDIELECIPLTQ | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6092991 | 6101948 | - | Sed0013477.1 | Sed03g0987 | 706474 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0987 | 414 | Pfam | Putative GTPase activating protein for Arf | 58 | 173 | IPR001164 | GO:0005096(InterPro) | |
Sed03g0987 | 414 | MobiDBLite | consensus disorder prediction | 177 | 204 | - | - | |
Sed03g0987 | 414 | CDD | C2_ArfGAP | 257 | 401 | - | - | |
Sed03g0987 | 414 | MobiDBLite | consensus disorder prediction | 177 | 248 | - | - | |
Sed03g0987 | 414 | SMART | C2_3c | 259 | 354 | IPR000008 | - | |
Sed03g0987 | 414 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 255 | 349 | IPR035892 | - | |
Sed03g0987 | 414 | PRINTS | HIV Rev interacting protein signature | 88 | 105 | IPR001164 | GO:0005096(InterPro) | |
Sed03g0987 | 414 | PRINTS | HIV Rev interacting protein signature | 69 | 88 | IPR001164 | GO:0005096(InterPro) | |
Sed03g0987 | 414 | PRINTS | HIV Rev interacting protein signature | 109 | 130 | IPR001164 | GO:0005096(InterPro) | |
Sed03g0987 | 414 | Pfam | C2 domain | 259 | 347 | IPR000008 | - | |
Sed03g0987 | 414 | Gene3D | Arf GTPase activating protein | 38 | 180 | IPR038508 | - | |
Sed03g0987 | 414 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 57 | 172 | IPR037278 | - | |
Sed03g0987 | 414 | MobiDBLite | consensus disorder prediction | 205 | 241 | - | - | |
Sed03g0987 | 414 | ProSiteProfiles | C2 domain profile. | 239 | 356 | IPR000008 | - | |
Sed03g0987 | 414 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 57 | 181 | IPR001164 | GO:0005096(InterPro) | |
Sed03g0987 | 414 | Gene3D | C2 domain | 257 | 401 | IPR035892 | - | |
Sed03g0987 | 414 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 46 | 414 | IPR044518 | GO:0005096(InterPro)|GO:0005543(InterPro) | |
Sed03g0987 | 414 | FunFam | stromal membrane-associated protein 1 isoform X1 | 41 | 177 | - | - | |
Sed03g0987 | 414 | SMART | arf_gap_3 | 57 | 179 | IPR001164 | GO:0005096(InterPro) | |
Sed03g0987 | 414 | CDD | ArfGap | 60 | 166 | - | - | |
Sed03g0987 | 414 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 256 | 414 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0987 | Sed-Chr3:6092991 | Sed07g2303 | Sed-Chr7:38818033 | 4.70E-133 | dispersed | |
Sed03g0987 | Sed-Chr3:6092991 | Sed03g0988 | Sed-Chr3:6092991 | 2.40E-201 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0987 | K12486 | - | csv:101215531 | 705.286 |