Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0988 ATGCTGCATCATTCTGGTAATAAGTTTTGTGCAGATTGTAACTCACCGGAACCGAAATGGGTATCGTTAAATTTGGGAGTTTTTATCTGCATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAACTAGATAATTGGACGGATGAACATGTCAATTCTTTGATAAGCATGGGCGGAAACTCAAATGTAAACAAGAAGTATGAAGCAGGCATCATGGATATGAACAAGAAACCAAAACCAGATTCCTGTATAGAGGAGCGCTTCGATTTTATAAGGAGAAAGTATGAACGGCTACAATTCTATAATGTCAATAGTCATAACTCTAGTGATAACCACTCATTAAGTAAAAGGAGTTCACCTTCACCATGTTCTCAAAACAACTCTTCAAGCAAGAATGGTACTCAGGAGAAAAGGCACTTTGAGAAACAAGCTACTCGGCATCGGATTGGGAATGCATTTCGTAACAGTCGGATGAGAAGAGATAGTGACCACAAGAGTTTTGACAAGAATGGCCCTTCAGTTTCGAGACAATCATCGGCAGGTATGGTTGAATTTGTTGGGTTGATAAAGGTCAACGTGGTTAAAGGCACTAACCTAGCTGTTCGAGACGTGGTGACCAGTGATCCCTATGTAATTCTCATGTTGGGTCATCAAACGGTGAAGACTCGAGTCATAAAGAACAACCTTAACCCAGTTTGGAATGAGAGCCTAATGCTGTCGATTCCTGAGCATATTCCTCCATTAAAAGTGCTTGTCTATGATAAGGATACATTTTCGACTGATGACTTTATGGGCGAGGCTGAAATCGACATTCAACCATTGGTTGCTGCCACAAAGGCCTACGAGAAGTCGACAATTGATGAATCGATGCAGCTGGGGAAATGGGTGGCAAGTAATGACAATACCTTGGTAAAAGATGGAATCATTAACGTAGCAGATGGAAAGGTTAGACAGGGTATATCTCTTAGATTGCAGAATGTGGAGAGAGGCATTCTGGATATTGAGCTAGAATGCATTCCTCTAACACAATAG 1059 40.89 MLHHSGNKFCADCNSPEPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEHVNSLISMGGNSNVNKKYEAGIMDMNKKPKPDSCIEERFDFIRRKYERLQFYNVNSHNSSDNHSLSKRSSPSPCSQNNSSSKNGTQEKRHFEKQATRHRIGNAFRNSRMRRDSDHKSFDKNGPSVSRQSSAGMVEFVGLIKVNVVKGTNLAVRDVVTSDPYVILMLGHQTVKTRVIKNNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNDNTLVKDGIINVADGKVRQGISLRLQNVERGILDIELECIPLTQ 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6092991 6097152 - Sed0013477.2 Sed03g0988 706475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0988 352 SMART arf_gap_3 1 117 IPR001164 GO:0005096(InterPro)
Sed03g0988 352 Gene3D C2 domain 195 339 IPR035892 -
Sed03g0988 352 ProSiteProfiles C2 domain profile. 177 294 IPR000008 -
Sed03g0988 352 SMART C2_3c 197 292 IPR000008 -
Sed03g0988 352 CDD ArfGap 1 104 - -
Sed03g0988 352 FunFam stromal membrane-associated protein 1 isoform X1 1 115 - -
Sed03g0988 352 MobiDBLite consensus disorder prediction 115 142 - -
Sed03g0988 352 CDD C2_ArfGAP 195 339 - -
Sed03g0988 352 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 352 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Sed03g0988 352 MobiDBLite consensus disorder prediction 115 186 - -
Sed03g0988 352 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 193 287 IPR035892 -
Sed03g0988 352 Gene3D Arf GTPase activating protein 1 118 IPR038508 -
Sed03g0988 352 MobiDBLite consensus disorder prediction 143 179 - -
Sed03g0988 352 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 194 352 - -
Sed03g0988 352 Pfam Putative GTPase activating protein for Arf 3 111 IPR001164 GO:0005096(InterPro)
Sed03g0988 352 PRINTS HIV Rev interacting protein signature 7 26 IPR001164 GO:0005096(InterPro)
Sed03g0988 352 PRINTS HIV Rev interacting protein signature 26 43 IPR001164 GO:0005096(InterPro)
Sed03g0988 352 PRINTS HIV Rev interacting protein signature 47 68 IPR001164 GO:0005096(InterPro)
Sed03g0988 352 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 119 IPR001164 GO:0005096(InterPro)
Sed03g0988 352 Pfam C2 domain 197 285 IPR000008 -
Sed03g0988 352 SUPERFAMILY ArfGap/RecO-like zinc finger 2 110 IPR037278 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0988 Sed-Chr3:6092991 Sed07g2303 Sed-Chr7:38818033 3.50E-129 dispersed
Sed03g0987 Sed-Chr3:6092991 Sed03g0988 Sed-Chr3:6092991 2.40E-201 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0988 K12486 - csv:101215531 589.341