Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0995 | ATGGCATCTGGAAGTCCTTATTTTGATGATATGCGGAGCATATCAGAGGTTATTGATCCTTCTCAAAATGATGATATGATGGATATCAGGGAAACTGTGGATGATCCTGCTCAAAATGAACTTAAACCGAAGGTTGCTGTTTCAAGCAGCGTTCGCGAGCTTTTGGAATGCCCAGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCAAATGGTCACACCTTGTGTTCTGGTTGCAAGCCTAGGGTGCACAACCGGTGCCCTACATGTAGGCACGAACTCGGAAATATTAGATGTCTTGCATTGGAGAAGGTGGCTGCATCGCTAGAACTGCCTTGTAAATATCAGAGCTATGGTTGCATTGGCATCTATCCATATTACAGTAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGTTGTCCATATGCTGGATCAGAATGTTCAGTAGTTGGTGATATACCCTATTTGGTGGCTCACCTGAAAGATGATCATAAAGTAGACATGCACAGTGGAAGCACATTCAACCATCGTTACGTTAAATCGAACCCTCAAGAAGTTGAAAACGCAACGTGGATGTTAACGGTAATTTTACTCGTAGACTTTTGTTTCAGTTCTCGGGCTGCCTACTCTGTTCCTTACCACCATGCTCTTGCGCTTATGCCCATTTTGAGCATTGTAACCATGTTAGATGTATAA | 711 | 42.33 | MASGSPYFDDMRSISEVIDPSQNDDMMDIRETVDDPAQNELKPKVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSVVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVILLVDFCFSSRAAYSVPYHHALALMPILSIVTMLDV | 236 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6110139 | 6112528 | - | Sed0004916.3 | Sed03g0995 | 706482 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0995 | 236 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 93 | IPR001841 | - | |
Sed03g0995 | 236 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 15 | 108 | - | - | |
Sed03g0995 | 236 | SUPERFAMILY | RING/U-box | 49 | 97 | - | - | |
Sed03g0995 | 236 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 109 | IPR013083 | - | |
Sed03g0995 | 236 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 39 | 221 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Sed03g0995 | 236 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 109 | 165 | - | - | |
Sed03g0995 | 236 | ProSiteProfiles | Zinc finger SIAH-type profile. | 110 | 170 | IPR013010 | GO:0008270(InterPro) | |
Sed03g0995 | 236 | Pfam | Sina, zinc finger | 106 | 181 | - | - | |
Sed03g0995 | 236 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 165 | IPR013083 | - | |
Sed03g0995 | 236 | CDD | RING-HC_SIAHs | 55 | 93 | - | - | |
Sed03g0995 | 236 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 57 | 92 | IPR049548 | - | |
Sed03g0995 | 236 | SUPERFAMILY | TRAF domain-like | 110 | 202 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0995 | Sed-Chr3:6110139 | Sed03g0997 | Sed-Chr3:6110139 | 5.60E-139 | dispersed | |
Sed03g0994 | Sed-Chr3:6110139 | Sed03g0995 | Sed-Chr3:6110139 | 5.60E-139 | tandem | |
Sed03g0995 | Sed-Chr3:6110139 | Sed03g0996 | Sed-Chr3:6110139 | 5.60E-139 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0995 | K04506 | - | csv:101220834 | 410.223 |