Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0995 ATGGCATCTGGAAGTCCTTATTTTGATGATATGCGGAGCATATCAGAGGTTATTGATCCTTCTCAAAATGATGATATGATGGATATCAGGGAAACTGTGGATGATCCTGCTCAAAATGAACTTAAACCGAAGGTTGCTGTTTCAAGCAGCGTTCGCGAGCTTTTGGAATGCCCAGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCAAATGGTCACACCTTGTGTTCTGGTTGCAAGCCTAGGGTGCACAACCGGTGCCCTACATGTAGGCACGAACTCGGAAATATTAGATGTCTTGCATTGGAGAAGGTGGCTGCATCGCTAGAACTGCCTTGTAAATATCAGAGCTATGGTTGCATTGGCATCTATCCATATTACAGTAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGTTGTCCATATGCTGGATCAGAATGTTCAGTAGTTGGTGATATACCCTATTTGGTGGCTCACCTGAAAGATGATCATAAAGTAGACATGCACAGTGGAAGCACATTCAACCATCGTTACGTTAAATCGAACCCTCAAGAAGTTGAAAACGCAACGTGGATGTTAACGGTAATTTTACTCGTAGACTTTTGTTTCAGTTCTCGGGCTGCCTACTCTGTTCCTTACCACCATGCTCTTGCGCTTATGCCCATTTTGAGCATTGTAACCATGTTAGATGTATAA 711 42.33 MASGSPYFDDMRSISEVIDPSQNDDMMDIRETVDDPAQNELKPKVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSVVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVILLVDFCFSSRAAYSVPYHHALALMPILSIVTMLDV 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6110139 6112528 - Sed0004916.3 Sed03g0995 706482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0995 236 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Sed03g0995 236 FunFam E3 ubiquitin-protein ligase SINAT5-like 15 108 - -
Sed03g0995 236 SUPERFAMILY RING/U-box 49 97 - -
Sed03g0995 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 109 IPR013083 -
Sed03g0995 236 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 221 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Sed03g0995 236 FunFam E3 ubiquitin-protein ligase SINAT3 109 165 - -
Sed03g0995 236 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270(InterPro)
Sed03g0995 236 Pfam Sina, zinc finger 106 181 - -
Sed03g0995 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
Sed03g0995 236 CDD RING-HC_SIAHs 55 93 - -
Sed03g0995 236 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 57 92 IPR049548 -
Sed03g0995 236 SUPERFAMILY TRAF domain-like 110 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0995 Sed-Chr3:6110139 Sed03g0997 Sed-Chr3:6110139 5.60E-139 dispersed
Sed03g0994 Sed-Chr3:6110139 Sed03g0995 Sed-Chr3:6110139 5.60E-139 tandem
Sed03g0995 Sed-Chr3:6110139 Sed03g0996 Sed-Chr3:6110139 5.60E-139 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0995 K04506 - csv:101220834 410.223