Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0998 ATGCCAGACGTGCAAACCCTAGTGAGTGATTTCGTTATCAAGCTTAAGAAACGTAAAATTGAGGGCTCCTTGGCCACCGCGAAGCTTACGGCTGAATTGCTTCGTTCTGTCATTTCTCAGCAGCGAATACCCTACACCAATCAGGCGGCTGCTTTGATTGAGGCCGTGAAAGCTGTTGGCGAGCAGCTGATTGCTGCCAATCCTGTTGAGCTTGCCGTGGGTAATATTGTGAGGCGTGTTTTGCATATTATTAGAGAGGAGAATCTCTCTCTCACCACAGCTTCAATTGGTGGGTTGAGCTTAGCAGCAGTTAGTGATGATGAAGATGATGTTGAAAAAGATGATCACCCAGCCCTCTCAGCCGCTGCTGTTGCAGCTGCTGCAAGAAGTACTTTGCGGCCACCTTCACTGCAAACTCTTCTTGAGGATGTTCCTAATCAAGCATCTGTTCGTCAAACTTCATCATCTGGAGGTGATTCAGAAGGAAAGAGCAAATCTGCTGATAAAAATTCAAGGAGTCGGAAACTGAAGCATGATGTAATTGAAGCTGTTAATGAACTTATTCAGGATATTGCTACTTGTCACGAACAGATTGCTGAGCAAGCAGTGGAGCACATCCATCAAAATGAGGTGATATTAACTCTGGGGAGTTCCAGAACAGTATTGGAATTTCTTTGTGCTGCTAAGGAGAAGAAAAGGTCCTTCCGGGTGTTTGTTGCTGAGGGTGCTCCAAGATATCAGGGTCATCTTCTTGCTAAGGAGTTGGTTTCAAGAGGTTTACAGACTACACTTATTACTGATTCTGCAGTTTTTGCCATGATCTCCCGAGTGAATATGGTAATAGTTGGAGCTCATGCTGTCATGGCGAATGGTGGTGTCATGGCACCTGTCGGTTTGAATATGGTTGCCCTTGCAGCTAAAAGGCATGCTGTTCCTTTTGTTGTACTAGCTGGAAGTCACAAGTTATGCCCTTTGTATCCTCACAACCCTGAAGTTCTACTCAATGAACTGAGATCCCCATCAGAGCTACTGGACTTCGGTGAATTTTCAGATTGCTTAGACTTTGGAAGTAACACTGGTTCTCCTCTTCTTCACGTAGTCAATCCTACATTTGACTATGTGCCACCATCACTTGTTAGTTTATTTGTCACTGACACAGGTGGTCATAACTCATCATACATGTATCGGCTCATTGCTGACTATTATTCAGCTGATGATTTGGTAATTAAACAACGGCCTTCTGCAGGGAGCTGA 1254 44.58 MPDVQTLVSDFVIKLKKRKIEGSLATAKLTAELLRSVISQQRIPYTNQAAALIEAVKAVGEQLIAANPVELAVGNIVRRVLHIIREENLSLTTASIGGLSLAAVSDDEDDVEKDDHPALSAAAVAAAARSTLRPPSLQTLLEDVPNQASVRQTSSSGGDSEGKSKSADKNSRSRKLKHDVIEAVNELIQDIATCHEQIAEQAVEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKELVSRGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVMAPVGLNMVALAAKRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCLDFGSNTGSPLLHVVNPTFDYVPPSLVSLFVTDTGGHNSSYMYRLIADYYSADDLVIKQRPSAGS 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6113805 6122355 - Sed0003663.1 Sed03g0998 706485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0998 417 MobiDBLite consensus disorder prediction 140 176 - -
Sed03g0998 417 SUPERFAMILY NagB/RpiA/CoA transferase-like 5 406 IPR037171 -
Sed03g0998 417 MobiDBLite consensus disorder prediction 162 176 - -
Sed03g0998 417 MobiDBLite consensus disorder prediction 140 161 - -
Sed03g0998 417 Pfam Initiation factor 2 subunit family 19 389 IPR000649 GO:0044237(InterPro)
Sed03g0998 417 Gene3D - 194 401 IPR042529 -
Sed03g0998 417 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 3 408 IPR051855 GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0006413(PANTHER)
Sed03g0998 417 FunFam translation initiation factor eIF-2B subunit beta 194 402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0998 Sed-Chr3:6113805 Sed03g0999 Sed-Chr3:6113805 5.80E-163 tandem
Sed04g2373 Sed-Chr4:37138985 Sed03g0998 Sed-Chr3:6113805 2.20E-18 transposed
Sed11g1560 Sed-Chr11:31190041 Sed03g0998 Sed-Chr3:6113805 2.60E-208 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0998 K03754 - csv:101220366 721.465