Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0999 ATGCCAGACGTGCAAACCCTAGTGAGTGATTTCGTTATCAAGCTTAAGAAACGTAAAATTGAGGGCTCCTTGGCCACCGCGAAGCTTACGGCTGAATTGCTTCGTTCTGTCATTTCTCAGCAGCGAATACCCTACACCAATCAGGCGGCTGCTTTGATTGAGGCCGTGAAAGCTGTTGGCGAGCAGCTGATTGCTGCCAATCCTGTTGAGCTTGCCGTGGGTAATATTGTGAGGCGTGTTTTGCATATTATTAGAGAGGAGAATCTCTCTCTCACCACAGCTTCAATTGGTGGGTTGAGCTTAGCAGCAGTTAGTGATGATGAAGATGATGTTGAAAAAGATGATCACCCAGCCCTCTCAGCCGCTGCTGTTGCAGCTGCTGCAAGAAGTACTTTGCGGCCACCTTCACTGCAAACTCTTCTTGAGGATGTTCCTAATCAAGCATCTGTTCGTCAAACTTCATCATCTGGAGGTGATTCAGAAGGAAAGAGCAAATCTGCTGATAAAAATTCAAGGAGTCGGAAACTGAAGCATGATGTAATTGAAGCTGTTAATGAACTTATTCAGGATATTGCTACTTGTCACGAACAGATTGCTGAGCAAGCAGTGGAGCACATCCATCAAAATGAGGTGATATTAACTCTGGGGAGTTCCAGAACAGTATTGGAATTTCTTTGTGCTGCTAAGGAGAAGAAAAGGTCCTTCCGGGTGTTTGTTGCTGAGGGTGCTCCAAGATATCAGGGTCATCTTCTTGCTAAGGAGTTGGTTTCAAGAGGTTTACAGACTACACTTATTACTGATTCTGCAGTTTTTGCCATGATCTCCCGAGTGAATATGGTAATAGTTGGAGCTCATGCTGTCATGGCGAATGGTGGTGTCATGGCACCTGTCGGTTTGAATATGGTTGCCCTTGCAGCTAAAAGGCATGCTGTTCCTTTTGTTGTACTAGCTGGAAGTCACAAGGTGATGTCATGA 975 45.33 MPDVQTLVSDFVIKLKKRKIEGSLATAKLTAELLRSVISQQRIPYTNQAAALIEAVKAVGEQLIAANPVELAVGNIVRRVLHIIREENLSLTTASIGGLSLAAVSDDEDDVEKDDHPALSAAAVAAAARSTLRPPSLQTLLEDVPNQASVRQTSSSGGDSEGKSKSADKNSRSRKLKHDVIEAVNELIQDIATCHEQIAEQAVEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKELVSRGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVMAPVGLNMVALAAKRHAVPFVVLAGSHKVMS 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6113805 6122355 - Sed0003663.2 Sed03g0999 706486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0999 324 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 3 322 IPR051855 GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0006413(PANTHER)
Sed03g0999 324 MobiDBLite consensus disorder prediction 140 176 - -
Sed03g0999 324 MobiDBLite consensus disorder prediction 162 176 - -
Sed03g0999 324 MobiDBLite consensus disorder prediction 140 161 - -
Sed03g0999 324 Pfam Initiation factor 2 subunit family 19 322 IPR000649 GO:0044237(InterPro)
Sed03g0999 324 Gene3D - 194 324 IPR042529 -
Sed03g0999 324 SUPERFAMILY NagB/RpiA/CoA transferase-like 5 322 IPR037171 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0999 Sed-Chr3:6113805 Sed11g1560 Sed-Chr11:31190041 8.20E-149 dispersed
Sed03g0998 Sed-Chr3:6113805 Sed03g0999 Sed-Chr3:6113805 5.80E-163 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0999 K03754 - csv:101220366 541.191