Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1011 ATGGGCGTCGCTGTTGAAACCGCTCAGTTCCATGTTCTTGCCGTTGACGATAGCTTCATCGACCGGAAAGTGATCGAGCGCCTCCTCAAAACCTCCTCTTATCACGTTACTGCTGTTGATTCCGGTTCCAAGGCCTTGGAATTTCTCGGTCTTGTTCAAGATCGCGATCGCGATCTCGACCTCGATGAAGAACGAGAATCCGAAATTCTCACCTCAAATCAAGAAGTGGATGTGAATCTGATCATCACCGATTACAGTATGCCAGGAATGAGCGGCTACGAACTCCTCAGAAAGATCAAGGAATCGAAATCTCTCAAAGACATACCGGTTGTGATTATGTCCTCTGAGAACGTTCCTTCGAGAATCAACAGATGCTTGGAGGATGGAGCCGAAGAGTTCTTCCTCAAACCAGTTCAATTGTCTGATGTGAGGAAGTTGAGACCTCATTTGATTAAAGAAAAATCCGCAACAAATTGA 477 45.91 MGVAVETAQFHVLAVDDSFIDRKVIERLLKTSSYHVTAVDSGSKALEFLGLVQDRDRDLDLDEERESEILTSNQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRINRCLEDGAEEFFLKPVQLSDVRKLRPHLIKEKSATN 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6211263 6212718 - Sed0008294.1 Sed03g1011 706498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1011 158 CDD REC_typeA_ARR 12 146 - -
Sed03g1011 158 Pfam Response regulator receiver domain 68 144 IPR001789 GO:0000160(InterPro)
Sed03g1011 158 SUPERFAMILY CheY-like 10 147 IPR011006 -
Sed03g1011 158 SMART REC_2 10 147 IPR001789 GO:0000160(InterPro)
Sed03g1011 158 ProSiteProfiles Response regulatory domain profile. 11 151 IPR001789 GO:0000160(InterPro)
Sed03g1011 158 Gene3D - 11 157 - -
Sed03g1011 158 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 153 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1011 Sed-Chr3:6211263 Sed07g2306 Sed-Chr7:38840372 1.90E-50 dispersed
Sed11g1542 Sed-Chr11:31030429 Sed03g1011 Sed-Chr3:6211263 4.30E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37804 PF00072 Response_reg 8.00E-20 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1011 K14492 - csv:101210839 245.743