Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1030 ATGAATGGGAAGGATGAATTTGAAGTTGAGAGTAGGACCAGTGATCCTCTGAGTATCTCCTCCGGCTGGCAATTTGCTGCTGCTAGTCTTGCTAATGAGTCTATAGGATTTGTTTCGACCGCGAATGGCCCCGTTGTTAGCAATGGGGATCTAAGTGTTTCTTCTTGTCCCTCAACTTCAATGTCTAACTCATTTAGTCCAGCCCTTTTCATTCACCATACCGACTCTCAAAACTCAGGGTTATGCAGCGCCTTTAATGAACAAAACAGCTTAGCTGCTTCTAGTATGACTGTAGTTGATGGTGAGGGTCTGAATTCTTTGAGATCTAGTAGTGATAGAATGCTGGGTACGGATTGGATTCAACAAAATCCATGGATGAAAGGAGTTTTCTCAGCTAATGTTCCTGGAATGTTTCCAGCTAATTTGTCTCAATTACCAGCTGATTCGGCATTCATAGAGCGCGCAGCACGTTTGTCTTGCTTCAATGGTGGAGTTTTTGGGGATTCACCTGCCGGTCCATTTGGTATTTCTGACTCTAGAGGCATTCATTCTAAGGGTGCATTTGAGAGGCAAAAATTTCTGTCTAGAAATGGAGCCTCCAAAGATGTCCCTTTGCCCATGGAGCATGAGGCTAAAGAAAAGAGTCCACCTAAGAATGAGAAAGAAAGAGAGATGTCTCAAGACAGGGCTAAACAAGGTTGTGTTGGTGAGGCTGGTAATGAATCTGATGGAGCGGGGTTAAGTGGCGGTCAAGATGAGCGATGCATGTTGGTAGGTACTGTCACAGAACCATCTGCTGAAGGACTTTGCTTCAAGAAAAGGAAAAGGGGTGTGCAGAATATGGGACGTGAACAAGTTAAAGAATCTCCCCAACAAATTAATGAAACTGCAATGAATGGATCATTAAAAGAGGGAGACCAAAACCCAAGTTCTACTGCTAACAAGCCTGCTGGGAAGCAAGGAAAACAAGATTCTCAACCATCAGATGCTCCCAAGGAAGAATATATTCATGTTAGAGCTCGAAGAGGCCAGGCGACAAACAGCCACAGTCTTGCCGAAAGGGTAAGAAGAGAAAAGATAAGTGAAAGAATGAGGCTCCTTCAGGACCTTGTACCTGGGTGCAGTAAGGTCACTGGCAAAGCTGTAATGCTAGATGAAATCATTAACTATGTACAGTCACTGCAACGGCAAGTCGAGTTTTTGTCCATGAAACTTGCAACAGTCAATCCCAGGCTAGATTTTAACGTAGAAGAGCTGCTCACAAAAGAAATCATTCAATCAAAGGCAGGTCCATCTTTATTTGGTTTTCCTCCTGATCTGCCTATGCCTTACCTCCCGCAGCATTCGTCTCATCACGGACTTATTCCACCTTGTCTTCCAAACATGGCGAGCTCTCCGGACCTGCTACGAAGAACAATTAATTCCCAGCTGGCATCACTTGTTGGTGGCTTCAAGGAGCCTGTTCAGCTACCGAACGTGTGGGAGAATGATATCCACAACGTTGTTCCAATGAACTTTGATGTCGCTGCACCTTCCAATGTCCAAGATGTAGATGGTTCTACTCCACCATGCAATACCAGAGCAGAACGCTAA 1593 44.7 MNGKDEFEVESRTSDPLSISSGWQFAAASLANESIGFVSTANGPVVSNGDLSVSSCPSTSMSNSFSPALFIHHTDSQNSGLCSAFNEQNSLAASSMTVVDGEGLNSLRSSSDRMLGTDWIQQNPWMKGVFSANVPGMFPANLSQLPADSAFIERAARLSCFNGGVFGDSPAGPFGISDSRGIHSKGAFERQKFLSRNGASKDVPLPMEHEAKEKSPPKNEKEREMSQDRAKQGCVGEAGNESDGAGLSGGQDERCMLVGTVTEPSAEGLCFKKRKRGVQNMGREQVKESPQQINETAMNGSLKEGDQNPSSTANKPAGKQGKQDSQPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNVEELLTKEIIQSKAGPSLFGFPPDLPMPYLPQHSSHHGLIPPCLPNMASSPDLLRRTINSQLASLVGGFKEPVQLPNVWENDIHNVVPMNFDVAAPSNVQDVDGSTPPCNTRAER 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6315514 6318130 + Sed0001870.1 Sed03g1030 706517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1030 530 Gene3D - 341 415 IPR036638 GO:0046983(InterPro)
Sed03g1030 530 SMART finulus 350 400 IPR011598 GO:0046983(InterPro)
Sed03g1030 530 MobiDBLite consensus disorder prediction 203 230 - -
Sed03g1030 530 MobiDBLite consensus disorder prediction 299 325 - -
Sed03g1030 530 MobiDBLite consensus disorder prediction 299 331 - -
Sed03g1030 530 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 143 445 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed03g1030 530 MobiDBLite consensus disorder prediction 193 251 - -
Sed03g1030 530 CDD bHLH_AtBPE_like 334 419 - -
Sed03g1030 530 FunFam Basic helix-loop-helix transcription factor 341 413 - -
Sed03g1030 530 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 344 394 IPR011598 GO:0046983(InterPro)
Sed03g1030 530 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 413 IPR036638 GO:0046983(InterPro)
Sed03g1030 530 Pfam Helix-loop-helix DNA-binding domain 347 395 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1030 Sed-Chr3:6315514 Sed06g1816 Sed-Chr6:42657790 4.40E-99 dispersed
Sed11g1869 Sed-Chr11:33289510 Sed03g1030 Sed-Chr3:6315514 1.10E-42 transposed
Sed11g1528 Sed-Chr11:30857573 Sed03g1030 Sed-Chr3:6315514 5.70E-240 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37807 PF00010 HLH 6.50E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1030 - - - 0.0