Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1038 ATGAACGGCGATGAAGCAGCAGCCTCCGCCGCACCCGCACCCGCCGCCGAGCCCCAGTACGTGAGGGCCAAGACTTCCGTGTGGTGGGACATCGAGAACTGCCCCGTCCCCAAGGGCTGCGACCACCACGCCATCGCCCAGAACATCAGCTCCGCCCTCGTCAAGATCAACTACTGCGGCCCCGTTTCCATTTCCGCCTACGGCGATACCAATCGCATTCCTAATTCTATTCAGCAGGCTCTCTCCAGTACTGGGATTTCCTTGAATCATGTCCCTGCTGGTGTTAAAGATGCAAGCGACAAGAAGATTCTAGTTGATATGTTGTTTTGGGCAGTTGATAACCCTGCTCCTGCAAATTATTTGCTAATTTCGGGTGATAGGGATTTTTCTAATGCACTTCATCAATTAAGAATGAGAAGATATAATATTCTTCTTGCACAACCAAAAAAGGCTTCTGCACCACTAGTCGCAGCAGCAAAGAGTGTTTGGCTTTGGATGAGTCTTGTAGCTGGAGGACCCCCAATGTCCAGTTCTGAATCATCTCAACTTCTCAATGGTAATCTTACTTCTGACCCTCCAATATCACATAACTCTGGATCTGGTCATAATCAGATGTCACAAGCTATAGTTTACAAACCTGAAAATGTCTCATTGGGAAATCAAAGACCTTATGCCACTGAGAGGATGGACAACAAACATAAAGGTAAGACGCAGAAAAACTCCAACCAACCAGTCATATCCAGAGTTTTAAGCCCACCTGTCTCTATGCAAGAGAAAAACCTTAATATTTCAAACCAACCGAATCATATCCAAGCAAAGCAGGTTAAGAAGGCACCCCATGAATTCTTTGGCAATGGCATTTCTGTACCCTCTTCTAGTCAGTCTACTCCAAACCTATATATTGAAAATTCCCGCCATGCTAGGACTGATGGCAATGTTTCAATGGGTAGTTCTTCCTCGAGTTACCAGTCTCCACACATGAGGCAAAACAACAAGCTGTTCCATCCTTCTTTTCGACCAGATTATGTTTTTCCTCCCAACGTCCATAATCATAATTCTTTCCCTGTCCCTGGTCAACCTGATCTCACTGCACCCAATTTTAGTAAGCTACATATCTCTGATTATCCCAATTATGCTATAAATCCTCCAAATTTTCATAATCAAGCTGGTGAATTTAGACCACATACCAAGCCTCAAAATACTACCAACTTTAATTTCCCAGAAAGAGGCCGTAGTCAGCATGGTGGCCAGTGGTTCCATCATGATGCATTGGATAAACGACATGCTCGTGATGTAGTAGAGTATACGCCTCATTCATCTTCCACCATTGTTACTAAAAGTTTGTCAAATAATGATGTCTGGGGATCTCAGGGGAAACCAGCACCTTCGCAGTACATTCAAGGCCTTATTGGAGTTATTCTTCTAGCATTAGATACCCTTAAAACGGAAAAGATTTCGCCAAGTGAGGCAAATATAGCTGACTGCATCCGATATGGAGATTCGAGAAACTGCAATATTGATGTAAAATTGGCTCTAGATAGTGCGATAGAGCATAATTTTGTATTGAAGCAGAATTCAGGCGCAGTGCAATTGTATGTTGGTAAAACAGAAAAATTGTGGCAATGTGTGAACCCTATATGTGAGCGTCTCAATCAGTACCAAAAAGCTTTATGGGATAAGATTCATAATTTTTTGGCTTCTCCAGCTGGTCGTTCTGCAATAATGGCTTCTCGTTGCAGATATGAAGCAGCATTAATTCTGAGGAAAGAATGCTTAAAAGATTTTGCCTTGGGCAATGTGCTTCAGATATTGAATATAGTAATAACAATGAAGAAATGGATTACTCATCGCAATTCAGGATGGCAGCCAATTGGTATTACGCTAACAGAAGGTAATACAGATGCAAGTTAA 1911 42.8 MNGDEAAASAAPAPAAEPQYVRAKTSVWWDIENCPVPKGCDHHAIAQNISSALVKINYCGPVSISAYGDTNRIPNSIQQALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPKKASAPLVAAAKSVWLWMSLVAGGPPMSSSESSQLLNGNLTSDPPISHNSGSGHNQMSQAIVYKPENVSLGNQRPYATERMDNKHKGKTQKNSNQPVISRVLSPPVSMQEKNLNISNQPNHIQAKQVKKAPHEFFGNGISVPSSSQSTPNLYIENSRHARTDGNVSMGSSSSSYQSPHMRQNNKLFHPSFRPDYVFPPNVHNHNSFPVPGQPDLTAPNFSKLHISDYPNYAINPPNFHNQAGEFRPHTKPQNTTNFNFPERGRSQHGGQWFHHDALDKRHARDVVEYTPHSSSTIVTKSLSNNDVWGSQGKPAPSQYIQGLIGVILLALDTLKTEKISPSEANIADCIRYGDSRNCNIDVKLALDSAIEHNFVLKQNSGAVQLYVGKTEKLWQCVNPICERLNQYQKALWDKIHNFLASPAGRSAIMASRCRYEAALILRKECLKDFALGNVLQILNIVITMKKWITHRNSGWQPIGITLTEGNTDAS 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6354707 6358498 - Sed0015340.1 Sed03g1038 706525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1038 636 CDD PIN_limkain_b1_N_like 24 148 - -
Sed03g1038 636 Gene3D - 20 167 - -
Sed03g1038 636 MobiDBLite consensus disorder prediction 176 203 - -
Sed03g1038 636 Pfam NYN domain 24 160 IPR021139 GO:0004540(InterPro)
Sed03g1038 636 PANTHER LIMKAIN B LKAP 15 511 IPR024768 GO:0005777(InterPro)|GO:0010468(InterPro)
Sed03g1038 636 Pfam OST-HTH Associated domain 577 630 IPR025677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1038 Sed-Chr3:6354707 Sed05g3838 Sed-Chr5:46017027 9.50E-32 dispersed
Sed11g1511 Sed-Chr11:30767641 Sed03g1038 Sed-Chr3:6354707 3.00E-267 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1038 - - - 0.0