Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1066 ATGCTGGCCGGCCTCGCCTTCAAGAGGCGGTGGCAGAACAAGCGCAAGGCCGAGGGGAAGGCCTTCGACAAGCCCAACATCGTGACGGGCGCCAACGTGCAAGTTTGCTGGGAGAAGTTCGCCCGATACTTCGAGGTGGAGCTGAAGGAGGTTAAGGTGAGAGAAGGGTATTACGTGATGGACCCTGTCCAGGCTGTGGACATGGTGGATGAGAACACCATCTGCGTTGCCGCCATCTTGGGATCCACTTACAATGGGGAGTTTGAAGATGTGAAGATGCTCAATGATCTGCTGGTGGAGAAGAACAAGGAAACGGGATGGGACACTCCCATTCATGTGGACGCAGCCAGTGGCGGATTCATCGCCCCGTTTCTGTACCCGGACCTCGACTGGGACTTCAGGCTTCCCTTGGTGAAGAGCATCAACGTGAGCGGCCACAAGTACGGGCTCGTGTACGCCGGAATCGGTTGGGTGATTTGGAGGACCAAAGAGGACTTGCCTGAAGAGCTCATTTTCCATATCAATTACTTGGGAGCTGATCAGCCCACCTTCACTCTCAACTTCTCCAAAGGGTCTAGCCAAATCATTGCTCAGTATTACCAACTAATCCGATTGGGTTTCGAGGGGTACCGAAATGTGATGCAAAACTGCCACGACAACGCGATGGTGTTGAAGGAAGGGCTGGAAAGCACCGGGAGATTCACCATAGCATCCAAGGACATGGGGGTGCCCGTGGTGGCGTTCTCCCTCAAAGACCGAACCCGACACGACGAGTTCGAGGTGTCCGAAATGCTGCGGCGGTTCGGGTGGATCGTGCCTGCGTATCCAATGCCCGAGGGGGCCAAGCACGTGTCGGTTCTTCGAGTGGTGATTCGAGAAGACTTCTCCCGCACCCTTGCAGGGCGGTTGGTGCTTGATATCATAAAGGTTTTGGCAGAGCTGGATACTCTTCCACCCAAGAAGAGTGAAAAAAACACAAGCTTGGAAAATGGGAAGAAGATGGCAGAGGAAACAGAGAGGGAAATGGCGACCACTAATTGGAAGGATATAACCAAGCATGTTACAAATCAGGCTGGTTCGGCACTTACTGTCATGGCCAAATAA 1104 53.53 MLAGLAFKRRWQNKRKAEGKAFDKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVQAVDMVDENTICVAAILGSTYNGEFEDVKMLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPDLDWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYRNVMQNCHDNAMVLKEGLESTGRFTIASKDMGVPVVAFSLKDRTRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAGRLVLDIIKVLAELDTLPPKKSEKNTSLENGKKMAEETEREMATTNWKDITKHVTNQAGSALTVMAK 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6476019 6478394 + Sed0013170.1 Sed03g1066 706553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1066 367 NCBIfam glutamate decarboxylase 1 314 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Sed03g1066 367 PANTHER GLUTAMATE DECARBOXYLASE 1 353 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Sed03g1066 367 SUPERFAMILY PLP-dependent transferases 1 314 IPR015424 -
Sed03g1066 367 Gene3D - 1 230 IPR015421 -
Sed03g1066 367 Gene3D - 231 318 - -
Sed03g1066 367 FunFam Glutamate decarboxylase 231 318 - -
Sed03g1066 367 Pfam Pyridoxal-dependent decarboxylase conserved domain 1 251 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1066 Sed-Chr3:6476019 Sed08g2018 Sed-Chr8:34467889 3.50E-156 dispersed
Sed03g1065 Sed-Chr3:6465532 Sed03g1066 Sed-Chr3:6476019 4.40E-194 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1066 K01580 - csv:101208026 664.84