Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1072 ATGGAAAGGAAGCTCTCTCAGCTTTCTGCTCTTCTTCCCCTTACTTTGGCAGTTGTTTTTATCTTATTTGGTTTGGATTGTTCTGCTGAACAAGAGGTTGTGACTTCAGTAAAAACTGATGCTGCTGCTCTTCTCAAGTTCAAGGATATGATTGACAAGGACCCAAATGAGGTTTTGTCCAGTTGGAAGATTGAGAACAGTCCATGTTCATGGTATGGAGTTTCATGTCAATTTGGAAGAGCAGTTGCTCTTGATCTTAGTGGTTGTAATCTTGTAGGAGATGTTTATTTTGATCCTTTGTCTTCTTTGGATATGTTGTTGGCTTTGAATTTGTCTACTAATTCTTTCACTATAAACTCAACTACTTTGCTTCAGCTTCCTTATAACTTGCAGCAACTTGAGCTCTCTCTTGCTAAGGTTGTAGGTAGTGTGCCTGAGAATCTTTTTTCTAAGTGTCCAAATCTTGTGTTTGTGGATCTTTCATTCAATAATTTGACAGGCTACCTCCCTAAAAATCTTCTGTTGAATGCTAATAAGCTTCAACATCTTGATCTCTCTTACAATAATCTAACTGGGTCCATCTCAGGATTGAGAATTGATGACAATTCTTGCAACTCTTTGTTGCATGTTGGGCTTTCGGGGAACCGAATCGTCGATTCGATTCCGAATTCCATTTCAAATTGCACAAATCTGCAAACACTTGATTTATCCTACAATTTTCTCAGTGGGGAAATCCCAAGAACTTTGGGGGGACTCAGCAGTTTACAGAGGGTGGATCTATCTCACAATCAGATCACTGGTTGGCTCCCTTCTGATTGGAGAAATGCCTGCAATTCACTTCAAGAACTAAAGCTTTGCTACAACAACATTTCTGGTGCAATTCCAGCTTCCTTCTCAGCTTGCTCTGGGCTTCAAATTCTTGATTTTTCAAATAACAACATATCTGGTCTTTTACCTGAGTCCATCTTCAAGAATCTTGTCTCTTTACAGAGTTTAGTGTTGAGTAATAACATTATCTCTGGACCATTGCCTTCAACCATATCCCACTGCAAGAAACTTCAGCTTGTAGACTTAAGTTCCAATAGAATTTCTGGTTTGATCTCACCAGATATATGTCCAGGCGCCGAGTCACTCCAAGAACTGAAGATGCCAGACAATCTTATCGTAGGAGGAATCCCACCTGAACTCTCACGGTGTTCTCAGCTAAAGACGATTGATTTTAGTTTAAATTATTTGAATGGCTCCATACCTGCAGAGCTTGGAAAGCTTCAAAATCTTGAGCAGCTGATAGCATGGTTCAATAGCTTAGAAGGGAAAATCCCTCCAGAATTGGGGAATTGTAGAAGCTTGAAGGATCTCATACTTAATAACAATCGTCTAAGCGGTGAAATCCCCACTGAATTGTTTAGCAGCAGCAATCTTGAATGGATTTCACTCACGAGCAATGAACTCACTGGTGAGGTCCCAAAAGAGTTTGGCCTTTTGTCAAGGCTGGCTGTCCTGCAACTTGGGAACAATAGCTTAAGTGGTCAGATACCAGCAGAGTTGGCAAAATGCAGCACTTTGGTTTGGTTGGATTTGAATAGCAATAAGCTTACTGGTGAAATCCCACCTAGACTTGGCAGGCAGCTTGGAGCCAAATCATTGAATGGGATTCTTTCTGGAAACACTCTAGTGTTTGTTCGAAATGTCGGTAATTCATGCAAAGGAGTTGGGGGTTTGTTAGAGTTTGCTGGAATCAGACCTGAAAGACTACAGCAGGAACCAACATTGAAGACCTGTGATTTCACTAGACTGTACTCAGGTCCGGTCCTCAGTTTGTTTACAAAGTACCAAACATTGGAGTACTTGGATCTTTCTTATAATGAGCTTCTTGGGAGGATACCAGAAGAGTTTGGAGATATGGTTGCATTACAGGTTCTCGAATTATCGCACAACCAACTTTCTGGTGAGATTCCAGAGACGTTCGGCCGCCTAAAGAACTTGGGAGTGTTTGATGCATCACATAATAGACTGCAGGGTCATATTCCAGATTCATTCTCAAACTTATCCTTCTTAGTACAAATTGATCTATCTTATAATGAACTAACAGGGCGAATTCCACCAAGAGGACAACTCAGTACACTACCTGCAAGTCAGTATGCAAATAATCCAGGACTTTGTGGAGTTCCCTTGCCTGAATGCCCGAGTGAGGATCAGCCGATGACAAGTCCTAATGTGGATGTTGGAAAGGGAAGAAGAAAAGAAGAAGCAGGGTCATGGGTTAATAGTATTGTTTTAGGTGTTCTTATTTCCATTGCTTGTGTCTGCATTTTGATTGTATGGGCCATTGCCATGCGTGCAAGGCGAAAAGAAGCAGAGGAAGTGAAGATGCTTAATAGTTTACAAGCAATACATGCCCCTACTACATGGAAAATTGACAAAGAGAAAGAGCCATTGAGTATCAATGTGGCGACTTTCCAAAGACAACTGAGGAAGCTCAAGTTCTCCCAGCTGATTGAAGCTACTAATGGCTTCTCAGCAGAAAGTCTTATTGGGAGTGGCGGGTTCGGCGAAGTGTTTAAAGCAACATTAAAAGATGGATCAAGTGTTGCAATCAAGAAACTGATACGTCTTAGTTGTCAGGGAGACCGTGAATTCATGGCCGAGATGGAAACATTGGGAAAGATCAAACATGGAAATCTAGTACCACTTCTAGGATATTGCAAAATAGGTGAGGAGAGGCTGCTAGTGTATGAGTTCATGGAGTTTGGTAGCCTAGAAGAGATGCTCCATGGAAGAACAAAGATGCAAGATAGAAGAATTCTAACATGGGATGAAAGGAAAAAGATTGCCAGAGGTGCAGCTAAAGGACTCTGTTTCTTACACCACAACTGCATTCCACACATAATTCACAGAGACATGAAGTCTAGCAATGTCCTTCTAGACCATGATTTAGAAGCAAGAGTTTCAGATTTTGGAATGGCCAGGCTCATCAGTGCTCTTGACACTCATCTGAGTGTGAGCACACTTGCAGGCACTCCTGGTTATGTCCCTCCTGAGTACTACCAAAGCTTTCGGTGCACAGCAAAAGGCGATGTCTATTCGTTCGGTGTTGTCCTCTTAGAACTCTTGACAGGGAAACGACCAACCGATAAGGAGGATTTTGGGGATACCAACTTGGTGGGATGGGTCAAAATGAAAGTGAACGATGGAAAACAAATGGAAGTGATAGATCCAGAGTTGCTTTCGGTAACCAAAGCAAGCGACGAATCAGAAGCCGAAGAAGTTAAAGAAATGATTAGGTATTTGGAGATAACCCTTCGGTGTGTAGAAGAATCTGCTTCCAAAAGGCCTAACATGTTGCAGGTTGTGGCCATGCTGCGAGAGTTGATGCCTGGATCAACCAATGGAAGCAGCAACAGTGCATGA 3411 41.98 MERKLSQLSALLPLTLAVVFILFGLDCSAEQEVVTSVKTDAAALLKFKDMIDKDPNEVLSSWKIENSPCSWYGVSCQFGRAVALDLSGCNLVGDVYFDPLSSLDMLLALNLSTNSFTINSTTLLQLPYNLQQLELSLAKVVGSVPENLFSKCPNLVFVDLSFNNLTGYLPKNLLLNANKLQHLDLSYNNLTGSISGLRIDDNSCNSLLHVGLSGNRIVDSIPNSISNCTNLQTLDLSYNFLSGEIPRTLGGLSSLQRVDLSHNQITGWLPSDWRNACNSLQELKLCYNNISGAIPASFSACSGLQILDFSNNNISGLLPESIFKNLVSLQSLVLSNNIISGPLPSTISHCKKLQLVDLSSNRISGLISPDICPGAESLQELKMPDNLIVGGIPPELSRCSQLKTIDFSLNYLNGSIPAELGKLQNLEQLIAWFNSLEGKIPPELGNCRSLKDLILNNNRLSGEIPTELFSSSNLEWISLTSNELTGEVPKEFGLLSRLAVLQLGNNSLSGQIPAELAKCSTLVWLDLNSNKLTGEIPPRLGRQLGAKSLNGILSGNTLVFVRNVGNSCKGVGGLLEFAGIRPERLQQEPTLKTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELLGRIPEEFGDMVALQVLELSHNQLSGEIPETFGRLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSYNELTGRIPPRGQLSTLPASQYANNPGLCGVPLPECPSEDQPMTSPNVDVGKGRRKEEAGSWVNSIVLGVLISIACVCILIVWAIAMRARRKEAEEVKMLNSLQAIHAPTTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGSGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHGNLVPLLGYCKIGEERLLVYEFMEFGSLEEMLHGRTKMQDRRILTWDERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHDLEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVNDGKQMEVIDPELLSVTKASDESEAEEVKEMIRYLEITLRCVEESASKRPNMLQVVAMLRELMPGSTNGSSNSA 1136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6517773 6521612 + Sed0009516.1 Sed03g1072 706559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1072 1136 ProSitePatterns Protein kinases ATP-binding region signature. 845 868 IPR017441 GO:0005524(InterPro)
Sed03g1072 1136 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 199 429 - -
Sed03g1072 1136 SUPERFAMILY L domain-like 596 724 - -
Sed03g1072 1136 FunFam serine/threonine-protein kinase BRI1-like 2 39 150 - -
Sed03g1072 1136 FunFam serine/threonine-protein kinase BRI1-like 2 800 914 - -
Sed03g1072 1136 SUPERFAMILY RNI-like 210 540 - -
Sed03g1072 1136 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 606 728 - -
Sed03g1072 1136 ProSiteProfiles Leucine-rich repeat profile. 179 201 IPR001611 GO:0005515(InterPro)
Sed03g1072 1136 CDD STKc_IRAK 845 1124 - -
Sed03g1072 1136 FunFam serine/threonine-protein kinase BRI1-like 2 915 1132 - -
Sed03g1072 1136 Gene3D Phosphorylase Kinase; domain 1 800 914 - -
Sed03g1072 1136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 963 975 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g1072 1136 SMART LRR_typ_2 423 447 IPR003591 -
Sed03g1072 1136 SMART LRR_typ_2 635 658 IPR003591 -
Sed03g1072 1136 SMART LRR_typ_2 659 682 IPR003591 -
Sed03g1072 1136 SMART LRR_typ_2 326 350 IPR003591 -
Sed03g1072 1136 SMART LRR_typ_2 301 325 IPR003591 -
Sed03g1072 1136 SMART LRR_typ_2 495 519 IPR003591 -
Sed03g1072 1136 SMART LRR_typ_2 252 275 IPR003591 -
Sed03g1072 1136 SMART LRR_typ_2 448 471 IPR003591 -
Sed03g1072 1136 Gene3D Ribonuclease Inhibitor 174 728 IPR032675 -
Sed03g1072 1136 ProSiteProfiles Protein kinase domain profile. 839 1125 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1072 1136 Gene3D - 553 609 - -
Sed03g1072 1136 SUPERFAMILY L domain-like 66 273 - -
Sed03g1072 1136 Pfam Brassinosteroid receptor island domain 550 608 IPR045381 -
Sed03g1072 1136 Pfam Leucine Rich Repeat 179 195 IPR001611 GO:0005515(InterPro)
Sed03g1072 1136 Pfam Leucine Rich Repeat 661 683 IPR001611 GO:0005515(InterPro)
Sed03g1072 1136 Pfam Leucine Rich Repeat 449 469 IPR001611 GO:0005515(InterPro)
Sed03g1072 1136 Pfam Leucine Rich Repeat 352 372 IPR001611 GO:0005515(InterPro)
Sed03g1072 1136 Pfam Leucine rich repeat 472 532 IPR001611 GO:0005515(InterPro)
Sed03g1072 1136 Pfam Leucine rich repeat 607 648 IPR001611 GO:0005515(InterPro)
Sed03g1072 1136 Pfam Leucine rich repeat 279 337 IPR001611 GO:0005515(InterPro)
Sed03g1072 1136 Pfam Leucine rich repeat 209 265 IPR001611 GO:0005515(InterPro)
Sed03g1072 1136 Pfam Protein kinase domain 841 1118 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g1072 1136 Gene3D Ribonuclease Inhibitor 39 150 IPR032675 -
Sed03g1072 1136 PANTHER RECEPTOR-LIKE PROTEIN 55 408 1121 - -
Sed03g1072 1136 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Sed03g1072 1136 Gene3D Transferase(Phosphotransferase) domain 1 915 1134 - -
Sed03g1072 1136 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 442 536 - -
Sed03g1072 1136 PRINTS Leucine-rich repeat signature 180 193 - -
Sed03g1072 1136 PRINTS Leucine-rich repeat signature 252 265 - -
Sed03g1072 1136 SUPERFAMILY Protein kinase-like (PK-like) 820 1121 IPR011009 -
Sed03g1072 1136 SMART serkin_6 839 1125 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1072 Sed-Chr3:6517773 Sed10g0462 Sed-Chr10:2930498 3.40E-141 dispersed
Sed03g1072 Sed-Chr3:6517773 Sed05g1860 Sed-Chr5:32038219 4.40E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78885 PF00069 Pkinase 1.40E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1072 - - - 0.0