Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1073 ATGTTGAAAGCTTTTCCTTCTTCTTCTTCAGCAGCTGACCATGGGGTCACCAGCAAAAGAAAAAGAAGACCAGCAGGAACTCCAGATCCGGATGCGGAAGTGGTTTCTTTGTCGCCGAAGACGCTACTGGAATCGGATCGGTATGTTTGCGAGATATGCAACCAAGGGTTTCAGAGGGATCAGAATCTGCAGATGCACCGGAGGCGGCACAAGGTGCCGTGGAAGCTGGTCAAGAGAGCGGAGACGGCGGAGGCGGTGAAGAAGAAGGTGTTTGTTTGCCCGGAGCCGAGCTGCCTGCACCATGAGCCTTGCCATGCCCTTGGAGACCTTGTGGGGATTAAGAAGCACTTCCGGAGAAAGCATAGCAACCAGAAACAGTGGGTTTGTGATAAGTGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGCGGTCGTGTCTTTTCCAGAGTGGAGAGCTTCATAGAACACCAAGACGCTTGCAATCTCCGGCAGATAAGGTCCGATCAGTTGCATCTGGCGGCACTACCGCCACCGCCGTTACTTCAACCGTACTCGCGATCAATTTCATACACCGGCACCACCACGAGCAACGACCATAGCTTTCCATTACGAGGGTTTCCAATCTTATCATCGTCAAACTCGGATCGAAACATCAACATTAACTTACCCGATCACCACGACCTAGAGCTCCATCTCTCGTCTCCGAGCTCGGCATTTCTAAAGCTCTCAATCGGGTCCAACAAGGAGGGGAGCGAGGAGCGGAAGCTTGACGTGGCGGTAGCGGAGAAGGCGTATGCGGAGGAGGCAAGACGAGAGGCCAAACGAGAGATGGAGATGGCGGAGGCGGAGTTTGCGAATGCGAAAATGATAAGGCAGCAAGCTCAGGCGGAGTTGGAGAAGGCGAGGATAATGAAGGAAGAGGCTAGCCGGAAAATGACATCCACAATTATGGAAATCACATGCCAAACTTGCCGCCTGCATTTCCACATCGGCTCCGCCGTGCCGGAGGAGACGTCGCTTGCCATCAGCTACATGTCGTCCGCCACCACCGAAGGCGACGGAGAATGA 1113 53.1 MLKAFPSSSSAADHGVTSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLVKRAETAEAVKKKVFVCPEPSCLHHEPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLRQIRSDQLHLAALPPPPLLQPYSRSISYTGTTTSNDHSFPLRGFPILSSSNSDRNININLPDHHDLELHLSSPSSAFLKLSIGSNKEGSEERKLDVAVAEKAYAEEARREAKREMEMAEAEFANAKMIRQQAQAELEKARIMKEEASRKMTSTIMEITCQTCRLHFHIGSAVPEETSLAISYMSSATTEGDGE 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6530278 6532229 - Sed0012942.1 Sed03g1073 706560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1073 370 Gene3D Classic Zinc Finger 26 94 - -
Sed03g1073 370 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Sed03g1073 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 70 IPR013087 -
Sed03g1073 370 SUPERFAMILY beta-beta-alpha zinc fingers 47 147 IPR036236 -
Sed03g1073 370 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 87 121 - -
Sed03g1073 370 Coils Coil 271 326 - -
Sed03g1073 370 SMART c2h2final6 91 121 IPR013087 -
Sed03g1073 370 SMART c2h2final6 127 154 IPR013087 -
Sed03g1073 370 SMART c2h2final6 48 70 IPR013087 -
Sed03g1073 370 MobiDBLite consensus disorder prediction 1 34 - -
Sed03g1073 370 FunFam protein indeterminate-domain 12-like 27 97 - -
Sed03g1073 370 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 324 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed03g1073 370 Gene3D Classic Zinc Finger 112 186 - -
Sed03g1073 370 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 126 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1073 Sed-Chr3:6530278 Sed08g2010 Sed-Chr8:34413558 7.10E-96 dispersed
Sed11g1488 Sed-Chr11:30634818 Sed03g1073 Sed-Chr3:6530278 5.20E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37808 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1073 K25871 - csv:101210468 588.186