Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1085 ATGGGTACCAAAATGCAGCCAATTCACAACTCTGTGGCTAAGTGGAATGAGCAAATGGGAACAACAAAGAAGGGTTACACATTTGTTCAAGCTAATAGGGCTTGGCTTCGAAAGTATCTTCTGTTTTGGATTTTGGGGATGGCATTTATCAGCATGTTAATATATAATGGTATGGATGCTGATAACAAAGTGAGGAGGATTGAGGTGTTGGGGAGCATGTGTGAGCAGAGGGCAAGGATGTTGCAGGATCAATTCAGTGTTAGTGTCAACCATGTTCATGCCTTGGCTGTGCTTGTTTCCACCTTTCATTATTTCAAGAGCCCTTCTGCGATTGATCAGGAAACTTTTGCAGAATACACAGCCAGAACTGCTTTTGAACGACCACTACTCAGTGGCGTGGCTTATGCACAAAGAGTTATTGATTCAGATAGGAATATATTCGAAAAGCAGCATGGGTGGATGATAAAAACAATGAAAAGAGAACCTTCGCCAATTCGAGATGAATATGCACCGGTTATATTTTCTCAAGAAACAGTCTCTTATATTGAATCACTGGATATGATGTCAGGAGAGGAGGACCGCGAAAATATTTTGAGGGCTAGAGCAACAGGAAAGGCTGGCTTAACAAGCCCTTTCAGGCTGCTGGGTACTCATCATCTTGGAGTTGTTTTGACGTTTCCCGTTTACAATTCCAAATTGCCATCTATTCCAACTGAAGAAGAACGTATAGAAGCAACATCAGGCTATGTTGGTGGAGCTTTTGATGTCGAGTCACTCGTGGAGAATTTGCTTGGGCAGCTTGCAGGGAATCAGGCCATTTTGGTAAATGTATACGATGTCACAAACTCTTCCAATCCCCTCGTCATGTATGGTCATCAATATCAAGATGGTGACATGTCTCTTTTGCATGAGAGTAGTCTTGATTTTGGAGATCCATTCAGAAAGCATCTGATGATTTGTAGATACCAGCAAAAGGCTCCCACATCCTGGACTGCCCTGACTACTGCATTTTTATTCTTCGTGATCGGGTTGTTAGTTGGATATATTTTGTATGGTGCAGCAACTCACATTGTCAAGGTCGAAGATGATTTTCATGAGATGCAAGTACTGAAAGTTCGAGCTGAGGCTGCTGATGTTGCAAAATCCCAGTTTCTTGCGACAGTTTCTCATGAAATTAGAACACCAATGAATGGCATTCTGGGAATGCTTGCTCTGCTTCTGGATACGGATTTAAGTTCAACTCAGAAGGATTATGCTCAGACTGCTCAAGCCTGTGGAAAGGCACTGATAACATTAATAAATGAGGTTCTTGATAGGGCAAAAATTGAAGCTGGAAAGTTAGAATTGGAAGCAGTTCCGTTCGACATTCGATCAATACTCGATGATGTACTATCTTTATTTTCCGAGAAGTCTAGACAAAAGGGTCTGGAGTTGGCAGTTTTTGTTTCTGACAAAGTTCCAGAAATTGTAATGGGTGATCCAGGAAGATTCAGACAAATTATAACAAATCTTGTGGGTAACTCTGTTAAGTTCACAGAAAGGGGACATATCTTTGTTAAAGTACATCTACCTGAGCACTCAAAAGGGTCCATTGAATCAAAATATGTCAATGGATTATCAGACAGTAACTTGTTTAAATCAGATAGTCAGGAATTTCAAACTTTAAGTGGACGTGAGGCAGCTGATGACCAGAACAGTTGGTATAACTTTAAACATCTAATTACTGAAGAGAACTTCCAGTCGAATGCTTCTCCAAACAACCAAGCAGTTACTTATGAGTGTTGTGGTCAAGTCACTTTGATGGTAAGTGTGGAGGATACAGGAATTGGGATCCTTTTACATGCCCAAAAACGAGTTTTTATGCCTTTCATGCAAGCAGATAGCTCGACCTCTCGAAATTATGGTGGAACTGGTATCGGCTTGAGTATCAGCAAATGTTTGGTTGAACTAATGAGTGGTCAGATCAACTTCATAAGCCGGCCTCAGATTGGAAGCACGTTTTCGTTCACTGCTGTTTTAGGAAAGTGTAAGAAAAAATCAGTCAATGACATGAAAAAGCCACACGCTGAAGAACTTCCCCCCAGTTTTAGAGGAATGAAAGCAATAATAGTTGACAGAAAACCAGTTAGAGCTTCTGTAACCAGATATCATTTGAAAAGACTTGGTATGATAGTTGAAGTCACCAGTAACATCAACATGGCAGATTCTTTCTGCAGAGAAAATGCCTCCACGGTACCAGGAAACGCATTCCTTCCAGATATGATCTTAGTTGAAAAAGACACATTGAAGTCTGATGAGGAATGTGGGATCCTTCATCAACTGAACTGGAAACTGAATGGGAGTTCGTTTCAGTTACCGAAGTTGATTCTGCTCGCCACAAATATCACCACTGCAGAGCTAGACAAGGCCAGGGCTGCAGGTTTTGCAGACACCGTGATCATGAAACCGTTGAGGGCGAGTATGGTGGCTGCCTGTCTTCAACAAGTTCTTGGTGTTAAGAATCAAAGACGGGGAAGTGGCCTACCAAATGGTTCTGCTTTCCTTCAGAGCCTTCTCTGTGGTAAGAGAATCTTAATTGTTGATGACAATAGAGTCAACCGCAGGGTCGCTGCAGGCGCTCTGAAGAAATTCGGTGCAGATGTTGAGTGTGCAGAGAGCGGAAAAGCTGCCCTGAAGTTGCTTCAGCTACCTCACGATTTCGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCGACTCGTCTTATCAGGATGATGGAGAGTGAGGCAAATGAGGGAGGATCAGCTACAGCAGAAAGCAAGTGGCATGTACCAATATTAGCAATGACGGCAGACGTGATTCATGCTACGTATGACGAGTGCCTGAAATGCGGAATGGATGGCTACGTCTCGAAGCCCTTCGAGGAAGAAAATCTATACAAGGAAGTTGCTAAGTTTTTCAAAAAATCATAA 2967 42.23 MGTKMQPIHNSVAKWNEQMGTTKKGYTFVQANRAWLRKYLLFWILGMAFISMLIYNGMDADNKVRRIEVLGSMCEQRARMLQDQFSVSVNHVHALAVLVSTFHYFKSPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIDSDRNIFEKQHGWMIKTMKREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAGLTSPFRLLGTHHLGVVLTFPVYNSKLPSIPTEEERIEATSGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSNPLVMYGHQYQDGDMSLLHESSLDFGDPFRKHLMICRYQQKAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQVLKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVMGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLPEHSKGSIESKYVNGLSDSNLFKSDSQEFQTLSGREAADDQNSWYNFKHLITEENFQSNASPNNQAVTYECCGQVTLMVSVEDTGIGILLHAQKRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMSGQINFISRPQIGSTFSFTAVLGKCKKKSVNDMKKPHAEELPPSFRGMKAIIVDRKPVRASVTRYHLKRLGMIVEVTSNINMADSFCRENASTVPGNAFLPDMILVEKDTLKSDEECGILHQLNWKLNGSSFQLPKLILLATNITTAELDKARAAGFADTVIMKPLRASMVAACLQQVLGVKNQRRGSGLPNGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECAESGKAALKLLQLPHDFDACFMDIQMPEMDGFEATRLIRMMESEANEGGSATAESKWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYKEVAKFFKKS 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6662777 6670834 + Sed0016680.1 Sed03g1085 706572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1085 988 SMART CHASE_2 107 292 IPR006189 -
Sed03g1085 988 SMART HisKA_10 380 445 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed03g1085 988 ProSiteProfiles CHASE domain profile. 107 319 IPR006189 -
Sed03g1085 988 SMART HKATPase_4 492 675 IPR003594 -
Sed03g1085 988 FunFam Histidine kinase 4 111 326 - -
Sed03g1085 988 Pfam His Kinase A (phospho-acceptor) domain 380 445 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed03g1085 988 SMART REC_2 855 981 IPR001789 GO:0000160(InterPro)
Sed03g1085 988 FunFam Histidine kinase 4 352 443 - -
Sed03g1085 988 ProSiteProfiles Response regulatory domain profile. 700 830 IPR001789 GO:0000160(InterPro)
Sed03g1085 988 PANTHER TWO-COMPONENT HISTIDINE KINASE 28 985 IPR050956 -
Sed03g1085 988 PRINTS Bacterial sensor protein C-terminal signature 618 628 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed03g1085 988 PRINTS Bacterial sensor protein C-terminal signature 635 653 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed03g1085 988 PRINTS Bacterial sensor protein C-terminal signature 600 614 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed03g1085 988 PRINTS Bacterial sensor protein C-terminal signature 659 672 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed03g1085 988 CDD REC_hyHK_CKI1_RcsC-like 857 981 - -
Sed03g1085 988 Gene3D - 444 678 IPR036890 -
Sed03g1085 988 CDD HisKA 380 441 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed03g1085 988 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 434 670 IPR036890 -
Sed03g1085 988 SUPERFAMILY CheY-like 695 832 IPR011006 -
Sed03g1085 988 Gene3D - 850 988 - -
Sed03g1085 988 Gene3D - 58 110 - -
Sed03g1085 988 ProSiteProfiles Histidine kinase domain profile. 387 675 IPR005467 -
Sed03g1085 988 Pfam CHASE domain 110 290 IPR006189 -
Sed03g1085 988 Gene3D - 353 443 - -
Sed03g1085 988 CDD HATPase_EvgS-ArcB-TorS-like 497 673 - -
Sed03g1085 988 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 446 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed03g1085 988 SUPERFAMILY CheY-like 854 984 IPR011006 -
Sed03g1085 988 Gene3D CHASE domain 111 326 IPR042240 -
Sed03g1085 988 ProSiteProfiles Response regulatory domain profile. 856 985 IPR001789 GO:0000160(InterPro)
Sed03g1085 988 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 590 670 IPR003594 -
Sed03g1085 988 Pfam Response regulator receiver domain 857 981 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1085 Sed-Chr3:6662777 Sed06g0270 Sed-Chr6:2245557 0.00E+00 dispersed
Sed03g1085 Sed-Chr3:6662777 Sed05g2083 Sed-Chr5:34029170 7.50E-270 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37813 PF02518 HATPase_c 7.90E-31 CL0025 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1085 K14489 - csv:101209777 1760.73