Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1105 ATGGGGGATGTGAAGGACAAGGTTAAGGGCTTCATGAAGCGCTTTAACAATTCGTTTTCCTCATCTTCGTCTGCAAGTTTCAAGGGTCAGGGAAGAGTTTTAGGGTCCTCTTCTTCCGGGTCGGCTACTTCTTTGCCCACCCGCCCATCGCAGAACCCAATTTCAAATCCCCCTTCAGATTCCCCGGTAAGTTCTAAGCTCCCTGTTGCGAATTCAATTCCCACTGCTGAAGTTAGGTCACAACAGCCGAATAAATCGAACCCAGATCGTAAACCGGCTGATGGGTTTGACCCATTTGATTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCGGAGTTACGCCTCTGAAGAAGAGGTTTCGGTCCATGTGGATACCTGTGTTAATGATAATACAGATCTGTCTGCGAATGATGTTGAATCTCGGACTGAATTGGAGGGTTGTGTTGCCAATTTCTTGTCTGGGAAACCATCTCAAGGTTCGTTGGAAATTGTTCTGAAGCTTTTGAGGAATGTAGTTCGGGAACCGGAGAATTCGAAGTTTAGGAAGATTCGTTTGAGCAATCCCAGGATTAAGGAGGCAATTGGTGAGGCTGTAGGGGGAGTGGAATTGTTGGAGTTTGTAGGGTTTAAATTGCAAGAGGATGAGGGTGAAATGTGGGCAACAATGGAAGTTCCAACAGAGGAAGAGATTAATGTATTGAGTAAGGTAATAGGTTCAATTGATCAGCCAAAGCTTGATGAACAGCAAAAGAAAGGCAGCACTTCATCTATGGATTCGGCTCAGGTTGTTGAATTGATTAAACCAAAGAAAGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAACGTTGCAGCACACATTGAACTACCAGACTCCTTCTACAGCCTATCAATTGAAGATGTAAAAAGGGAAGCTATAATGAGGAAGCAAAAGATTGCTGAATCTCAGCTTTTGATTCCAAAATCTTACAAAGAAAAACAGGCCAAAGCTGGTAGGAAAAAGTACACTAGAACAGTCATCAGAATTCAGTTTCCTGATGGCGTGGTACTTCAAGGTGTTTTTTCGCCTCGGGAACCAACAACTTCTCTATATGAGTTTGTGAGCACAGCACTGAAAGAACCCAGTTTGGAATTCGAGTTGATACATCCTGTTGGTGTTAGACGACGTACAATTGCACGTTTTCCTGCAGATGGAGTGAAAGCTAAAACACTAGATGATGAGGAGTTAGTCCCCTCAGCTCTTGTCAAGTTTAGACCCATTGAAACAGATTCTGTTGTCTTCACGGGTTTGTGTAATGAACTCCTTGAGATCATCGAGCCACTCGTTAGCGGGTCAGCTGTAGCTCCTCCTGCACAAGTTTAA 1410 43.69 MGDVKDKVKGFMKRFNNSFSSSSSASFKGQGRVLGSSSSGSATSLPTRPSQNPISNPPSDSPVSSKLPVANSIPTAEVRSQQPNKSNPDRKPADGFDPFDSFITSGKRSGNGYSLNVFECPICGRSYASEEEVSVHVDTCVNDNTDLSANDVESRTELEGCVANFLSGKPSQGSLEIVLKLLRNVVREPENSKFRKIRLSNPRIKEAIGEAVGGVELLEFVGFKLQEDEGEMWATMEVPTEEEINVLSKVIGSIDQPKLDEQQKKGSTSSMDSAQVVELIKPKKVDRQIRVFFAVPENVAAHIELPDSFYSLSIEDVKREAIMRKQKIAESQLLIPKSYKEKQAKAGRKKYTRTVIRIQFPDGVVLQGVFSPREPTTSLYEFVSTALKEPSLEFELIHPVGVRRRTIARFPADGVKAKTLDDEELVPSALVKFRPIETDSVVFTGLCNELLEIIEPLVSGSAVAPPAQV 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6774097 6777612 + Sed0013468.1 Sed03g1105 706592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1105 469 SUPERFAMILY PUG domain-like 171 234 IPR036339 -
Sed03g1105 469 Gene3D - 343 435 - -
Sed03g1105 469 Pfam PUB domain 172 244 IPR018997 -
Sed03g1105 469 SMART ubx_3 346 435 IPR001012 GO:0005515(InterPro)
Sed03g1105 469 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 460 - GO:0050832(PANTHER)
Sed03g1105 469 Gene3D - 167 256 - -
Sed03g1105 469 SMART PGNneu 173 240 - -
Sed03g1105 469 MobiDBLite consensus disorder prediction 57 88 - -
Sed03g1105 469 ProSiteProfiles UBX domain profile. 349 433 IPR001012 GO:0005515(InterPro)
Sed03g1105 469 MobiDBLite consensus disorder prediction 15 50 - -
Sed03g1105 469 CDD PUB 162 233 - -
Sed03g1105 469 MobiDBLite consensus disorder prediction 15 99 - -
Sed03g1105 469 SUPERFAMILY Ubiquitin-like 321 433 IPR029071 -
Sed03g1105 469 FunFam UBX domain-containing protein 6 343 434 - -
Sed03g1105 469 Pfam UBX domain 349 430 IPR001012 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0518 Sed-Chr11:5076842 Sed03g1105 Sed-Chr3:6774097 7.50E-06 dispersed
Sed11g0519 Sed-Chr11:5076842 Sed03g1105 Sed-Chr3:6774097 7.50E-06 dispersed
Sed03g1105 Sed-Chr3:6774097 Sed03g1106 Sed-Chr3:6774097 2.50E-178 tandem
Sed11g1683 Sed-Chr11:32076447 Sed03g1105 Sed-Chr3:6774097 2.50E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37815 PF00789 UBX 1.90E-07 CL0072 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1105 K14011 - csv:101209321 740.339